RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 PTGER2P43116 358 aa19.89■□□□□ 0.77
SS18-211ENST00000578954 SKAP1Q86WV1 359 aa19.89■□□□□ 0.77
SS18-211ENST00000578954 CLASRPQ8N2M8 674 aaKnown RBP19.89■□□□□ 0.77
SS18-211ENST00000578954 DLEC1Q9Y238 1755 aa19.89■□□□□ 0.77
SS18-211ENST00000578954 LRRC37AA6NMS7 1700 aa19.88■□□□□ 0.77
SS18-211ENST00000578954 TNNI3KQ59H18 835 aa19.88■□□□□ 0.77
SS18-211ENST00000578954 STYK1Q6J9G0 422 aa19.88■□□□□ 0.77
SS18-211ENST00000578954 MASTLQ96GX5 879 aa19.88■□□□□ 0.77
SS18-211ENST00000578954 CEP126Q9P2H0 1117 aa19.88■□□□□ 0.77
SS18-211ENST00000578954 FPGT-TNNI3KV9GXZ4 949 aa19.88■□□□□ 0.77
SS18-211ENST00000578954 METTL24Q5JXM2 366 aa19.87■□□□□ 0.77
SS18-211ENST00000578954 TMC4Q7Z404 712 aa19.87■□□□□ 0.77
SS18-211ENST00000578954 C16orf71Q8IYS4 520 aaPredicted RBP19.87■□□□□ 0.77
SS18-211ENST00000578954 EAF2Q96CJ1 260 aaPredicted RBP19.87■□□□□ 0.77
SS18-211ENST00000578954 KIAA1551Q9HCM1 1747 aa19.87■□□□□ 0.77
SS18-211ENST00000578954 BBOX1O75936 387 aa19.86■□□□□ 0.77
SS18-211ENST00000578954 PDE8BO95263 885 aa19.86■□□□□ 0.77
SS18-211ENST00000578954 C2CD5Q86YS7 1000 aa19.86■□□□□ 0.77
SS18-211ENST00000578954 PLEKHM2Q8IWE5 1019 aa19.86■□□□□ 0.77
SS18-211ENST00000578954 OTUD7AQ8TE49 926 aaPredicted RBP19.86■□□□□ 0.77
SS18-211ENST00000578954 OSBPL3Q9H4L5 887 aa19.86■□□□□ 0.77
SS18-211ENST00000578954 MINPP1Q9UNW1 487 aa19.86■□□□□ 0.77
SS18-211ENST00000578954 H0YIN7 160 aa19.85■□□□□ 0.77
SS18-211ENST00000578954 CHRNDQ07001 517 aa19.85■□□□□ 0.77
SS18-211ENST00000578954 STAP2Q9UGK3 403 aa19.85■□□□□ 0.77
SS18-211ENST00000578954 AKAP2Q9Y2D5 859 aa19.85■□□□□ 0.77
SS18-211ENST00000578954 AOX1Q06278 1338 aa19.84■□□□□ 0.77
SS18-211ENST00000578954 FGFR2P21802 821 aa19.84■□□□□ 0.77
SS18-211ENST00000578954 ALDH1B1P30837 517 aa19.84■□□□□ 0.77
SS18-211ENST00000578954 RGS3P49796 1198 aa19.84■□□□□ 0.77
SS18-211ENST00000578954 AACSQ86V21 672 aa19.84■□□□□ 0.77
SS18-211ENST00000578954 ARAP2Q8WZ64 1704 aa19.84■□□□□ 0.77
SS18-211ENST00000578954 MX1P20591 662 aa19.83■□□□□ 0.77
SS18-211ENST00000578954 PDE1AP54750 535 aa19.83■□□□□ 0.77
SS18-211ENST00000578954 ANKRD2Q9GZV1 360 aa19.83■□□□□ 0.77
SS18-211ENST00000578954 SPON1Q9HCB6 807 aa19.83■□□□□ 0.77
SS18-211ENST00000578954 TTC41PQ6P2S7 1318 aa19.82■□□□□ 0.76
SS18-211ENST00000578954 A0A1B0GUL7 405 aa19.82■□□□□ 0.76
SS18-211ENST00000578954 SOCS7O14512 581 aa19.82■□□□□ 0.76
SS18-211ENST00000578954 IFIT2P09913 472 aaKnown RBP19.82■□□□□ 0.76
SS18-211ENST00000578954 CHRNA5P30532 468 aa19.82■□□□□ 0.76
SS18-211ENST00000578954 TGFB2P61812 414 aa19.82■□□□□ 0.76
SS18-211ENST00000578954 PUM3Q15397 648 aaKnown RBP19.82■□□□□ 0.76
SS18-211ENST00000578954 CNKSR1Q969H4 720 aa19.82■□□□□ 0.76
SS18-211ENST00000578954 DBNLQ9UJU6 430 aaKnown RBP19.82■□□□□ 0.76
SS18-211ENST00000578954 CD2APQ9Y5K6 639 aa19.82■□□□□ 0.76
SS18-211ENST00000578954 LTBP1Q14766 1721 aa19.82■□□□□ 0.76
SS18-211ENST00000578954 PPEF1O14829 653 aaPredicted RBP19.81■□□□□ 0.76
SS18-211ENST00000578954 ATP2B3Q16720 1220 aa19.81■□□□□ 0.76
SS18-211ENST00000578954 SP8Q8IXZ3 490 aa19.81■□□□□ 0.76
SS18-211ENST00000578954 LPIN2Q92539 896 aa19.81■□□□□ 0.76
SS18-211ENST00000578954 TLR7Q9NYK1 1049 aaKnown RBP19.81■□□□□ 0.76
SS18-211ENST00000578954 KCNA3P22001 575 aa19.8■□□□□ 0.76
SS18-211ENST00000578954 UBE4AQ14139 1066 aa19.8■□□□□ 0.76
SS18-211ENST00000578954 DBNDD2Q9BQY9 259 aa19.8■□□□□ 0.76
SS18-211ENST00000578954 CCDC8Q9H0W5 538 aaPredicted RBP19.8■□□□□ 0.76
SS18-211ENST00000578954 ATP6V0A2Q9Y487 856 aa19.8■□□□□ 0.76
SS18-211ENST00000578954 HELBQ8NG08 1087 aaPredicted RBP19.79■□□□□ 0.76
SS18-211ENST00000578954 PI4K2BQ8TCG2 481 aa19.79■□□□□ 0.76
SS18-211ENST00000578954 ZNF622Q969S3 477 aaKnown RBP eCLIP19.79■□□□□ 0.762e-8■□□□□ 10.1
SS18-211ENST00000578954 ECHDC1Q9NTX5 307 aa19.79■□□□□ 0.76
SS18-211ENST00000578954 PODXL2Q9NZ53 605 aa19.79■□□□□ 0.76
SS18-211ENST00000578954 XDHP47989 1333 aa19.78■□□□□ 0.76
SS18-211ENST00000578954 TAF5LO75529 589 aa19.78■□□□□ 0.76
SS18-211ENST00000578954 DPEP1P16444 411 aa19.78■□□□□ 0.76
SS18-211ENST00000578954 TIMM10P62072 90 aa19.78■□□□□ 0.76
SS18-211ENST00000578954 GPATCH3Q96I76 525 aa19.78■□□□□ 0.76
SS18-211ENST00000578954 SLX4Q8IY92 1834 aa19.78■□□□□ 0.76
SS18-211ENST00000578954 BRCA1P38398 1863 aaKnown RBP19.77■□□□□ 0.76
SS18-211ENST00000578954 SNED1Q8TER0 1413 aa19.77■□□□□ 0.76
SS18-211ENST00000578954 SLC5A1P13866 664 aa19.77■□□□□ 0.76
SS18-211ENST00000578954 BMP2KLQ5H9B9 411 aa19.77■□□□□ 0.76
SS18-211ENST00000578954 TTC22Q5TAA0 569 aa19.77■□□□□ 0.76
SS18-211ENST00000578954 PRPF40BQ6NWY9 871 aaKnown RBP19.77■□□□□ 0.76
SS18-211ENST00000578954 C7orf43Q8WVR3 580 aa19.77■□□□□ 0.76
SS18-211ENST00000578954 XAGE2Q96GT9 111 aa19.77■□□□□ 0.76
SS18-211ENST00000578954 LEMD3Q9Y2U8 911 aa19.77■□□□□ 0.76
SS18-211ENST00000578954 IRS2Q9Y4H2 1338 aa19.76■□□□□ 0.75
SS18-211ENST00000578954 CACNA1SQ13698 1873 aa19.76■□□□□ 0.75
SS18-211ENST00000578954 ERC2O15083 957 aa19.76■□□□□ 0.75
SS18-211ENST00000578954 ZBTB22O15209 634 aa19.76■□□□□ 0.75
SS18-211ENST00000578954 GLRX3O76003 335 aaKnown RBP19.76■□□□□ 0.75
SS18-211ENST00000578954 IFIT1P09914 478 aaKnown RBP19.76■□□□□ 0.75
SS18-211ENST00000578954 ADORA1P30542 326 aa19.76■□□□□ 0.75
SS18-211ENST00000578954 SLC51AQ86UW1 340 aa19.76■□□□□ 0.75
SS18-211ENST00000578954 ZNF512BQ96KM6 892 aaPredicted RBP19.76■□□□□ 0.75
SS18-211ENST00000578954 NEUROD6Q96NK8 337 aa19.76■□□□□ 0.75
SS18-211ENST00000578954 DUOX1Q9NRD9 1551 aa19.75■□□□□ 0.75
SS18-211ENST00000578954 A0A0G2JLW4 131 aa19.75■□□□□ 0.75
SS18-211ENST00000578954 GSPT1P15170 499 aaKnown RBP19.75■□□□□ 0.75
SS18-211ENST00000578954 ATP5JP18859 108 aa19.75■□□□□ 0.75
SS18-211ENST00000578954 GPSM2P81274 684 aa19.75■□□□□ 0.75
SS18-211ENST00000578954 CC2D2BQ6DHV5 1058 aa19.75■□□□□ 0.75
SS18-211ENST00000578954 C15orf52Q6ZUT6 534 aaKnown RBP19.75■□□□□ 0.75
SS18-211ENST00000578954 TTLL6Q8N841 843 aa19.75■□□□□ 0.75
SS18-211ENST00000578954 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.75■□□□□ 0.75
SS18-211ENST00000578954 BCL11AQ9H165 835 aa19.75■□□□□ 0.75
SS18-211ENST00000578954 ZNF804BA4D1E1 1349 aa19.75■□□□□ 0.75
SS18-211ENST00000578954 SNAP23O00161 211 aa19.74■□□□□ 0.75
SS18-211ENST00000578954 ATP2B4P23634 1241 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 603.1 ms