RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 C11orf57Q6ZUT1 292 aaPredicted RBP20.6■□□□□ 0.89
SYNE3-202ENST00000553340 CCAR1Q8IX12 1150 aaKnown RBP20.6■□□□□ 0.89
SYNE3-202ENST00000553340 COPRSQ9NQ92 184 aa20.6■□□□□ 0.89
SYNE3-202ENST00000553340 RCOR1Q9UKL0 485 aa20.6■□□□□ 0.89
SYNE3-202ENST00000553340 BECN2A8MW95 431 aa20.6■□□□□ 0.89
SYNE3-202ENST00000553340 PSME1Q06323 249 aa20.6■□□□□ 0.89
SYNE3-202ENST00000553340 ADD1P35611 737 aaKnown RBP20.59■□□□□ 0.89
SYNE3-202ENST00000553340 RBM6P78332 1123 aaKnown RBP20.59■□□□□ 0.89
SYNE3-202ENST00000553340 MCMDC2Q4G0Z9 681 aa20.59■□□□□ 0.89
SYNE3-202ENST00000553340 TNNI3KQ59H18 835 aa20.59■□□□□ 0.89
SYNE3-202ENST00000553340 EPHA10Q5JZY3 1008 aa20.59■□□□□ 0.89
SYNE3-202ENST00000553340 CCDC73Q6ZRK6 1079 aa20.59■□□□□ 0.89
SYNE3-202ENST00000553340 CTNNA3Q9UI47 895 aa20.59■□□□□ 0.89
SYNE3-202ENST00000553340 FPGT-TNNI3KV9GXZ4 949 aa20.59■□□□□ 0.89
SYNE3-202ENST00000553340 PFKFB2O60825 505 aa20.59■□□□□ 0.89
SYNE3-202ENST00000553340 ZNF592Q92610 1267 aa20.59■□□□□ 0.89
SYNE3-202ENST00000553340 PHRF1Q9P1Y6 1649 aaKnown RBP20.59■□□□□ 0.89
SYNE3-202ENST00000553340 HMGB1P09429 215 aaKnown RBP20.58■□□□□ 0.89
SYNE3-202ENST00000553340 CCDC129Q6ZRS4 1044 aa20.58■□□□□ 0.89
SYNE3-202ENST00000553340 ZNF609O15014 1411 aa20.58■□□□□ 0.89
SYNE3-202ENST00000553340 KINO60870 393 aaKnown RBP20.58■□□□□ 0.89
SYNE3-202ENST00000553340 ATL3Q6DD88 541 aa20.57■□□□□ 0.88
SYNE3-202ENST00000553340 DNAJC2Q99543 621 aaKnown RBP20.57■□□□□ 0.88
SYNE3-202ENST00000553340 LRRC2Q9BYS8 371 aa20.57■□□□□ 0.88
SYNE3-202ENST00000553340 ANO10Q9NW15 660 aa20.57■□□□□ 0.88
SYNE3-202ENST00000553340 KIF13AQ9H1H9 1805 aa20.57■□□□□ 0.88
SYNE3-202ENST00000553340 SKILP12757 684 aa20.57■□□□□ 0.88
SYNE3-202ENST00000553340 TFCP2Q12800 502 aa20.57■□□□□ 0.88
SYNE3-202ENST00000553340 PTPN14Q15678 1187 aa20.57■□□□□ 0.88
SYNE3-202ENST00000553340 NSUN7Q8NE18 718 aaKnown RBP20.57■□□□□ 0.88
SYNE3-202ENST00000553340 ZNF396Q96N95 335 aaPredicted RBP20.57■□□□□ 0.88
SYNE3-202ENST00000553340 SEC62Q99442 399 aaKnown RBP20.57■□□□□ 0.88
SYNE3-202ENST00000553340 MYD88Q99836 296 aa20.57■□□□□ 0.88
SYNE3-202ENST00000553340 METTL22Q9BUU2 404 aaPredicted RBP20.57■□□□□ 0.88
SYNE3-202ENST00000553340 NDUFB9Q9Y6M9 179 aa20.57■□□□□ 0.88
SYNE3-202ENST00000553340 MYL6BP14649 208 aa20.56■□□□□ 0.88
SYNE3-202ENST00000553340 SNW1Q13573 536 aaKnown RBP20.56■□□□□ 0.88
SYNE3-202ENST00000553340 ARID5BQ14865 1188 aa20.56■□□□□ 0.88
SYNE3-202ENST00000553340 DHX32Q7L7V1 743 aaKnown RBP20.56■□□□□ 0.88
SYNE3-202ENST00000553340 GOLPH3LQ9H4A5 285 aa20.56■□□□□ 0.88
SYNE3-202ENST00000553340 FAM160A1Q05DH4 1040 aa20.56■□□□□ 0.88
SYNE3-202ENST00000553340 NAA30Q147X3 362 aaPredicted RBP20.56■□□□□ 0.88
SYNE3-202ENST00000553340 HAUS7Q99871 368 aa20.56■□□□□ 0.88
SYNE3-202ENST00000553340 PTPDC1A2A3K4 754 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 PTPN12Q05209 780 aaKnown RBP20.55■□□□□ 0.88
SYNE3-202ENST00000553340 NYAP1Q6ZVC0 841 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 ANKRD24Q8TF21 1146 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 XAGE3Q8WTP9 111 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 USP28Q96RU2 1077 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 FTOQ9C0B1 505 aaKnown RBP eCLIP20.55■□□□□ 0.88
SYNE3-202ENST00000553340 SIPA1L3O60292 1781 aaPredicted RBP20.55■□□□□ 0.88
SYNE3-202ENST00000553340 CCDC69A6NI79 296 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 RFX5P48382 616 aaPredicted RBP20.55■□□□□ 0.88
SYNE3-202ENST00000553340 COPS6Q7L5N1 327 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 FILIP1Q7Z7B0 1213 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 ARHGEF25Q86VW2 580 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 CEP57L1Q8IYX8 460 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 DNAJC5Q9H3Z4 198 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 DDX41Q9UJV9 622 aaKnown RBP20.55■□□□□ 0.88
SYNE3-202ENST00000553340 USP16Q9Y5T5 823 aa20.55■□□□□ 0.88
SYNE3-202ENST00000553340 MYH15Q9Y2K3 1946 aa20.54■□□□□ 0.88
SYNE3-202ENST00000553340 USP27XA6NNY8 438 aa20.54■□□□□ 0.88
SYNE3-202ENST00000553340 CHGBP05060 677 aa20.54■□□□□ 0.88
SYNE3-202ENST00000553340 FOSBP53539 338 aa20.54■□□□□ 0.88
SYNE3-202ENST00000553340 STOX1Q6ZVD7 989 aa20.54■□□□□ 0.88
SYNE3-202ENST00000553340 DHX40Q8IX18 779 aaKnown RBP20.54■□□□□ 0.88
SYNE3-202ENST00000553340 ENGASEQ8NFI3 743 aa20.54■□□□□ 0.88
SYNE3-202ENST00000553340 GCP02774 474 aa20.54■□□□□ 0.88
SYNE3-202ENST00000553340 ESCO1Q5FWF5 840 aa20.54■□□□□ 0.88
SYNE3-202ENST00000553340 ZNF790Q6PG37 636 aa20.54■□□□□ 0.88
SYNE3-202ENST00000553340 DDX46Q7L014 1031 aaKnown RBP20.54■□□□□ 0.88
SYNE3-202ENST00000553340 DBNDD2Q9BQY9 259 aa20.54■□□□□ 0.88
SYNE3-202ENST00000553340 NAT10Q9H0A0 1025 aaKnown RBP20.54■□□□□ 0.88
SYNE3-202ENST00000553340 CTDNEP1O95476 244 aa20.53■□□□□ 0.88
SYNE3-202ENST00000553340 ME1P48163 572 aa20.53■□□□□ 0.88
SYNE3-202ENST00000553340 SH3TC1Q8TE82 1336 aa20.53■□□□□ 0.88
SYNE3-202ENST00000553340 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.53■□□□□ 0.88
SYNE3-202ENST00000553340 CCZ1BP86790 482 aa20.53■□□□□ 0.88
SYNE3-202ENST00000553340 CCZ1P86791 482 aaPredicted RBP20.53■□□□□ 0.88
SYNE3-202ENST00000553340 APOBRQ0VD83 1088 aa20.53■□□□□ 0.88
SYNE3-202ENST00000553340 FSIP1Q8NA03 581 aa20.53■□□□□ 0.88
SYNE3-202ENST00000553340 KBTBD3Q8NAB2 608 aa20.53■□□□□ 0.88
SYNE3-202ENST00000553340 SLC39A6Q13433 755 aa20.52■□□□□ 0.87
SYNE3-202ENST00000553340 ANKRD13DQ6ZTN6 518 aa20.52■□□□□ 0.87
SYNE3-202ENST00000553340 GSDMDP57764 484 aa20.51■□□□□ 0.87
SYNE3-202ENST00000553340 CCAR2Q8N163 923 aaKnown RBP20.51■□□□□ 0.87
SYNE3-202ENST00000553340 CCT2P78371 535 aaKnown RBP20.51■□□□□ 0.87
SYNE3-202ENST00000553340 GABPB1Q06547 395 aaPredicted RBP20.51■□□□□ 0.87
SYNE3-202ENST00000553340 RABL6Q3YEC7 729 aaPredicted RBP20.51■□□□□ 0.87
SYNE3-202ENST00000553340 CHMP4CQ96CF2 233 aa20.51■□□□□ 0.87
SYNE3-202ENST00000553340 AGXT2Q9BYV1 514 aa20.51■□□□□ 0.87
SYNE3-202ENST00000553340 ZNF215Q9UL58 517 aaPredicted RBP20.51■□□□□ 0.87
SYNE3-202ENST00000553340 MORC2Q9Y6X9 1032 aaPredicted RBP20.51■□□□□ 0.87
SYNE3-202ENST00000553340 EXOSC10Q01780 885 aaKnown RBP20.5■□□□□ 0.87
SYNE3-202ENST00000553340 AOPEPQ8N6M6 819 aa20.5■□□□□ 0.87
SYNE3-202ENST00000553340 ZNF397Q8NF99 534 aaPredicted RBP20.5■□□□□ 0.87
SYNE3-202ENST00000553340 KIF18AQ8NI77 898 aa20.5■□□□□ 0.87
SYNE3-202ENST00000553340 KCND1Q9NSA2 647 aa20.5■□□□□ 0.87
SYNE3-202ENST00000553340 LMTK3Q96Q04 1460 aa20.5■□□□□ 0.87
SYNE3-202ENST00000553340 KIF2AO00139 706 aaPredicted RBP20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms