RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 CEP63Q96MT8 703 aa8.28□□□□□ -1.08
SCFD1-208ENST00000553278 hCG_2014768A0A024R1R8 64 aa8.27□□□□□ -1.09
SCFD1-208ENST00000553278 TTC24A2A3L6 582 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-208ENST00000553278 SPINT1O43278 529 aa8.27□□□□□ -1.09
SCFD1-208ENST00000553278 FCGRTP55899 365 aa8.27□□□□□ -1.09
SCFD1-208ENST00000553278 IGBP1P78318 339 aa8.27□□□□□ -1.09
SCFD1-208ENST00000553278 TYRO3Q06418 890 aa8.27□□□□□ -1.09
SCFD1-208ENST00000553278 ANKS3Q6ZW76 656 aa8.27□□□□□ -1.09
SCFD1-208ENST00000553278 ANKRD24Q8TF21 1146 aa8.27□□□□□ -1.09
SCFD1-208ENST00000553278 ZNF296Q8WUU4 475 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-208ENST00000553278 SRPK1Q96SB4 655 aaKnown RBP8.27□□□□□ -1.09
SCFD1-208ENST00000553278 R3HCC1Q9Y3T6 440 aaKnown RBP8.27□□□□□ -1.09
SCFD1-208ENST00000553278 A0A1B0GTH6 734 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 A0A1W2PP55 124 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 UPP2O95045 317 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 VEGFBP49765 207 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 POU4F2Q12837 409 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 PRPF40BQ6NWY9 871 aaKnown RBP8.26□□□□□ -1.09
SCFD1-208ENST00000553278 SV2BQ7L1I2 683 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 ZNF598Q86UK7 904 aaKnown RBP8.26□□□□□ -1.09
SCFD1-208ENST00000553278 GLIS3Q8NEA6 775 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 ZCRB1Q8TBF4 217 aaKnown RBP8.26□□□□□ -1.09
SCFD1-208ENST00000553278 CPLX3Q8WVH0 158 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 KCNB2Q92953 911 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 NT5C1AQ9BXI3 368 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 CHMP4AQ9BY43 222 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 OXCT2Q9BYC2 517 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-208ENST00000553278 GINM1Q9NU53 330 aa8.26□□□□□ -1.09
SCFD1-208ENST00000553278 A0A1W2PNR3 127 aa8.25□□□□□ -1.09
SCFD1-208ENST00000553278 ETFBP38117 255 aa8.25□□□□□ -1.09
SCFD1-208ENST00000553278 SOX9P48436 509 aa8.25□□□□□ -1.09
SCFD1-208ENST00000553278 DTHD1Q6ZMT9 781 aa8.25□□□□□ -1.09
SCFD1-208ENST00000553278 EAF1Q96JC9 268 aaPredicted RBP8.25□□□□□ -1.09
SCFD1-208ENST00000553278 ZFYVE1Q9HBF4 777 aa8.25□□□□□ -1.09
SCFD1-208ENST00000553278 CWC22Q9HCG8 908 aaKnown RBP8.25□□□□□ -1.09
SCFD1-208ENST00000553278 PKD2L1Q9P0L9 805 aa8.25□□□□□ -1.09
SCFD1-208ENST00000553278 AKAP2Q9Y2D5 859 aa8.25□□□□□ -1.09
SCFD1-208ENST00000553278 SUPT16HQ9Y5B9 1047 aaKnown RBP8.25□□□□□ -1.09
SCFD1-208ENST00000553278 MRVI1Q9Y6F6 885 aa8.25□□□□□ -1.09
SCFD1-208ENST00000553278 PHF20L1A8MW92 1017 aa8.24□□□□□ -1.09
SCFD1-208ENST00000553278 F6X3S4 739 aa8.24□□□□□ -1.09
SCFD1-208ENST00000553278 J3QL48 77 aa8.24□□□□□ -1.09
SCFD1-208ENST00000553278 ENPP3O14638 875 aa8.24□□□□□ -1.09
SCFD1-208ENST00000553278 MSX1P28360 303 aa8.24□□□□□ -1.09
SCFD1-208ENST00000553278 GRNP28799 593 aaKnown RBP8.24□□□□□ -1.09
SCFD1-208ENST00000553278 CTSOP43234 321 aaPredicted RBP8.24□□□□□ -1.09
SCFD1-208ENST00000553278 PRICKLE2Q7Z3G6 844 aa8.24□□□□□ -1.09
SCFD1-208ENST00000553278 CYP4X1Q8N118 509 aa8.24□□□□□ -1.09
SCFD1-208ENST00000553278 GPATCH3Q96I76 525 aa8.24□□□□□ -1.09
SCFD1-208ENST00000553278 TRIM56Q9BRZ2 755 aaKnown RBP8.24□□□□□ -1.09
SCFD1-208ENST00000553278 BRINP2Q9C0B6 783 aa8.24□□□□□ -1.09
SCFD1-208ENST00000553278 TIMMDC1Q9NPL8 285 aa8.24□□□□□ -1.09
SCFD1-208ENST00000553278 TMEM238LA0A1B0GVL6 79 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 LCE2BO14633 110 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 ANAPC15P60006 121 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 MAP3K10Q02779 954 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 RAB33AQ14088 237 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 LAPTM4AQ15012 233 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 MAP3K11Q16584 847 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 LYSMD3Q7Z3D4 306 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 LINC00528Q8N1L1 170 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 LIN7BQ9HAP6 207 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 KCNQ5Q9NR82 932 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 LATS2Q9NRM7 1088 aa8.23□□□□□ -1.09
SCFD1-208ENST00000553278 KLF4O43474 513 aa8.22□□□□□ -1.09
SCFD1-208ENST00000553278 CTC1Q2NKJ3 1217 aa8.22□□□□□ -1.09
SCFD1-208ENST00000553278 FBXL19Q6PCT2 694 aa8.22□□□□□ -1.09
SCFD1-208ENST00000553278 LRP10Q7Z4F1 713 aa8.22□□□□□ -1.09
SCFD1-208ENST00000553278 PHC3Q8NDX5 983 aa8.22□□□□□ -1.09
SCFD1-208ENST00000553278 RHOVQ96L33 236 aa8.22□□□□□ -1.09
SCFD1-208ENST00000553278 CEP44Q9C0F1 390 aa8.22□□□□□ -1.09
SCFD1-208ENST00000553278 BRD7Q9NPI1 651 aa8.22□□□□□ -1.09
SCFD1-208ENST00000553278 KANSL3Q9P2N6 904 aa8.22□□□□□ -1.09
SCFD1-208ENST00000553278 PRKAG3Q9UGI9 489 aa8.22□□□□□ -1.09
SCFD1-208ENST00000553278 RAB11FIP3O75154 756 aa8.21□□□□□ -1.1
SCFD1-208ENST00000553278 APOBRQ0VD83 1088 aa8.21□□□□□ -1.1
SCFD1-208ENST00000553278 SNAP47Q5SQN1 464 aa8.21□□□□□ -1.1
SCFD1-208ENST00000553278 PEAR1Q5VY43 1037 aaPredicted RBP8.21□□□□□ -1.1
SCFD1-208ENST00000553278 RNF217Q8TC41 542 aa8.21□□□□□ -1.1
SCFD1-208ENST00000553278 HNRNPLLQ8WVV9 542 aaKnown RBP8.21□□□□□ -1.1
SCFD1-208ENST00000553278 ANAPC16Q96DE5 110 aa8.21□□□□□ -1.1
SCFD1-208ENST00000553278 DEPDC7Q96QD5 511 aa8.21□□□□□ -1.1
SCFD1-208ENST00000553278 ABCB6Q9NP58 842 aa8.21□□□□□ -1.1
SCFD1-208ENST00000553278 SNTG2Q9NY99 539 aa8.21□□□□□ -1.1
SCFD1-208ENST00000553278 NOP58Q9Y2X3 529 aaKnown RBP8.21□□□□□ -1.1
SCFD1-208ENST00000553278 GREM1O60565 184 aa8.2□□□□□ -1.1
SCFD1-208ENST00000553278 FBXO24O75426 580 aa8.2□□□□□ -1.1
SCFD1-208ENST00000553278 CYP2E1P05181 493 aaPredicted RBP8.2□□□□□ -1.1
SCFD1-208ENST00000553278 LIG3P49916 1009 aa8.2□□□□□ -1.1
SCFD1-208ENST00000553278 FAM160A1Q05DH4 1040 aa8.2□□□□□ -1.1
SCFD1-208ENST00000553278 TNNI3KQ59H18 835 aa8.2□□□□□ -1.1
SCFD1-208ENST00000553278 PCNX4Q63HM2 1172 aa8.2□□□□□ -1.1
SCFD1-208ENST00000553278 PGBD3Q8N328 593 aa8.2□□□□□ -1.1
SCFD1-208ENST00000553278 OR13H1Q8NG92 308 aa8.2□□□□□ -1.1
SCFD1-208ENST00000553278 MICAL1Q8TDZ2 1067 aa8.2□□□□□ -1.1
SCFD1-208ENST00000553278 NKD1Q969G9 470 aa8.2□□□□□ -1.1
SCFD1-208ENST00000553278 RNPC3Q96LT9 517 aaKnown RBP8.2□□□□□ -1.1
SCFD1-208ENST00000553278 SRRTQ9BXP5 876 aaKnown RBP8.2□□□□□ -1.1
SCFD1-208ENST00000553278 METTL14Q9HCE5 456 aaKnown RBP8.2□□□□□ -1.1
SCFD1-208ENST00000553278 MARCH6O60337 910 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms