RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ITGA6P23229 1130 aa17.47■□□□□ 0.39
CUX1-214ENST00000550008 TAF5LO75529 589 aa17.47■□□□□ 0.39
CUX1-214ENST00000550008 SLC4A4Q9Y6R1 1079 aa17.47■□□□□ 0.39
CUX1-214ENST00000550008 SSBP05455 408 aaKnown RBP eCLIP17.47■□□□□ 0.39
CUX1-214ENST00000550008 ZHX3Q9H4I2 956 aa17.47■□□□□ 0.39
CUX1-214ENST00000550008 CTDP1Q9Y5B0 961 aaPredicted RBP17.47■□□□□ 0.39
CUX1-214ENST00000550008 PDIA4P13667 645 aaKnown RBP17.46■□□□□ 0.39
CUX1-214ENST00000550008 RASEFQ8IZ41 740 aa17.46■□□□□ 0.39
CUX1-214ENST00000550008 NOC3LQ8WTT2 800 aaKnown RBP17.46■□□□□ 0.39
CUX1-214ENST00000550008 UBE2Q2Q8WVN8 375 aa17.46■□□□□ 0.39
CUX1-214ENST00000550008 INTS4Q96HW7 963 aaKnown RBP17.46■□□□□ 0.39
CUX1-214ENST00000550008 ZKSCAN3Q9BRR0 538 aa17.46■□□□□ 0.39
CUX1-214ENST00000550008 GADD45BO75293 160 aaPredicted RBP17.46■□□□□ 0.39
CUX1-214ENST00000550008 OTUD7BQ6GQQ9 843 aa17.46■□□□□ 0.39
CUX1-214ENST00000550008 CTCFLQ8NI51 663 aaPredicted RBP17.46■□□□□ 0.39
CUX1-214ENST00000550008 NOL7Q9UMY1 257 aaKnown RBP17.46■□□□□ 0.39
CUX1-214ENST00000550008 CDK12Q9NYV4 1490 aaPredicted RBP17.46■□□□□ 0.39
CUX1-214ENST00000550008 IBTKQ9P2D0 1353 aaPredicted RBP17.46■□□□□ 0.39
CUX1-214ENST00000550008 SSRP1Q08945 709 aaKnown RBP17.46■□□□□ 0.39
CUX1-214ENST00000550008 ANKRD18AQ8IVF6 992 aa17.46■□□□□ 0.39
CUX1-214ENST00000550008 DDX19AQ9NUU7 478 aaKnown RBP17.46■□□□□ 0.39
CUX1-214ENST00000550008 HSPA4P34932 840 aa17.45■□□□□ 0.38
CUX1-214ENST00000550008 CDK5RAP3Q96JB5 506 aa17.45■□□□□ 0.38
CUX1-214ENST00000550008 PTPDC1A2A3K4 754 aa17.45■□□□□ 0.38
CUX1-214ENST00000550008 ZFYP08048 801 aaPredicted RBP17.45■□□□□ 0.38
CUX1-214ENST00000550008 DHX32Q7L7V1 743 aaKnown RBP17.45■□□□□ 0.38
CUX1-214ENST00000550008 MAGEB6Q8N7X4 407 aa17.45■□□□□ 0.38
CUX1-214ENST00000550008 XAGE2Q96GT9 111 aa17.45■□□□□ 0.38
CUX1-214ENST00000550008 TTC12Q9H892 705 aaPredicted RBP17.45■□□□□ 0.38
CUX1-214ENST00000550008 TCEAL9Q9UHQ7 104 aa17.45■□□□□ 0.38
CUX1-214ENST00000550008 UTP14AQ9BVJ6 771 aaKnown RBP17.45■□□□□ 0.38
CUX1-214ENST00000550008 TRMT1Q9NXH9 659 aaKnown RBP17.45■□□□□ 0.38
CUX1-214ENST00000550008 ZBTB43O43298 467 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 UQCRFS1P1P0C7P4 283 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 SOGA3Q5TF21 947 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 ALG1Q9BT22 464 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 NAP1L1P55209 391 aaKnown RBP17.44■□□□□ 0.38
CUX1-214ENST00000550008 WASF1Q92558 559 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 RBSNQ9H1K0 784 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 ANO10Q9NW15 660 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 RFC4P35249 363 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 CCDC191Q8NCU4 936 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 VAT1LQ9HCJ6 419 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 JAK2O60674 1132 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 LRRC24Q50LG9 513 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 CLIP2Q9UDT6 1046 aa17.44■□□□□ 0.38
CUX1-214ENST00000550008 ERBB3P21860 1342 aa17.43■□□□□ 0.38
CUX1-214ENST00000550008 CCDC196A0A1B0GTZ2 297 aa17.43■□□□□ 0.38
CUX1-214ENST00000550008 TSPY2A6NKD2 308 aa17.43■□□□□ 0.38
CUX1-214ENST00000550008 MPHOSPH10O00566 681 aaKnown RBP17.43■□□□□ 0.38
CUX1-214ENST00000550008 RPGRQ92834 1020 aaKnown RBP17.43■□□□□ 0.38
CUX1-214ENST00000550008 DNAJC25Q9H1X3 360 aa17.43■□□□□ 0.38
CUX1-214ENST00000550008 ANO6Q4KMQ2 910 aa17.43■□□□□ 0.38
CUX1-214ENST00000550008 AK7Q96M32 723 aa17.43■□□□□ 0.38
CUX1-214ENST00000550008 ASAP1Q9ULH1 1129 aa17.43■□□□□ 0.38
CUX1-214ENST00000550008 STX8Q9UNK0 236 aa17.43■□□□□ 0.38
CUX1-214ENST00000550008 FILIP1LQ4L180 1135 aa17.42■□□□□ 0.38
CUX1-214ENST00000550008 CNNM3Q8NE01 707 aa17.42■□□□□ 0.38
CUX1-214ENST00000550008 SETDB2Q96T68 719 aa17.42■□□□□ 0.38
CUX1-214ENST00000550008 RNF41Q9H4P4 317 aaPredicted RBP17.42■□□□□ 0.38
CUX1-214ENST00000550008 KIF24Q5T7B8 1368 aa17.42■□□□□ 0.38
CUX1-214ENST00000550008 RPS6KB1P23443 525 aa17.42■□□□□ 0.38
CUX1-214ENST00000550008 C16orf45Q96MC5 204 aaPredicted RBP17.42■□□□□ 0.38
CUX1-214ENST00000550008 ADCK5Q3MIX3 580 aa17.42■□□□□ 0.38
CUX1-214ENST00000550008 KBTBD3Q8NAB2 608 aa17.42■□□□□ 0.38
CUX1-214ENST00000550008 WTAPQ15007 396 aa17.42■□□□□ 0.38
CUX1-214ENST00000550008 ZNF444Q8N0Y2 327 aaPredicted RBP17.42■□□□□ 0.38
CUX1-214ENST00000550008 QRICH2Q9H0J4 1663 aa17.41■□□□□ 0.38
CUX1-214ENST00000550008 ZAP70P43403 619 aa17.41■□□□□ 0.38
CUX1-214ENST00000550008 NLRP3Q96P20 1036 aa17.41■□□□□ 0.38
CUX1-214ENST00000550008 LMBRD1Q9NUN5 540 aa17.41■□□□□ 0.38
CUX1-214ENST00000550008 PNPLA6Q8IY17 1366 aa17.41■□□□□ 0.38
CUX1-214ENST00000550008 CATIPQ7Z7H3 387 aa17.41■□□□□ 0.38
CUX1-214ENST00000550008 CCDC112Q8NEF3 446 aa17.41■□□□□ 0.38
CUX1-214ENST00000550008 PUS3Q9BZE2 481 aaKnown RBP17.41■□□□□ 0.38
CUX1-214ENST00000550008 WWC3Q9ULE0 1092 aa17.41■□□□□ 0.38
CUX1-214ENST00000550008 B4E1Z4 1266 aa17.41■□□□□ 0.38
CUX1-214ENST00000550008 F8W031 263 aaPredicted RBP17.41■□□□□ 0.38
CUX1-214ENST00000550008 MBD4O95243 580 aa17.4■□□□□ 0.38
CUX1-214ENST00000550008 NLRP5P59047 1200 aa17.4■□□□□ 0.38
CUX1-214ENST00000550008 ZSCAN16Q9H4T2 348 aaPredicted RBP17.4■□□□□ 0.38
CUX1-214ENST00000550008 ME3Q16798 604 aa17.4■□□□□ 0.38
CUX1-214ENST00000550008 CCDC43Q96MW1 224 aaKnown RBP17.4■□□□□ 0.38
CUX1-214ENST00000550008 TMEM63CQ9P1W3 806 aa17.4■□□□□ 0.38
CUX1-214ENST00000550008 KRT18P05783 430 aaKnown RBP17.4■□□□□ 0.38
CUX1-214ENST00000550008 NAA16Q6N069 864 aaPredicted RBP17.4■□□□□ 0.38
CUX1-214ENST00000550008 ANTXR1Q9H6X2 564 aa17.4■□□□□ 0.38
CUX1-214ENST00000550008 KDRP35968 1356 aa17.39■□□□□ 0.38
CUX1-214ENST00000550008 MYL10Q9BUA6 226 aa17.39■□□□□ 0.37
CUX1-214ENST00000550008 DBNLQ9UJU6 430 aaKnown RBP17.39■□□□□ 0.37
CUX1-214ENST00000550008 AOX1Q06278 1338 aa17.39■□□□□ 0.37
CUX1-214ENST00000550008 CDC37L1Q7L3B6 337 aa17.39■□□□□ 0.37
CUX1-214ENST00000550008 SH3TC1Q8TE82 1336 aa17.39■□□□□ 0.37
CUX1-214ENST00000550008 LRRC7Q96NW7 1537 aa17.39■□□□□ 0.37
CUX1-214ENST00000550008 GPAA1O43292 621 aa17.39■□□□□ 0.37
CUX1-214ENST00000550008 PPFIBP1Q86W92 1011 aa17.39■□□□□ 0.37
CUX1-214ENST00000550008 CPLX3Q8WVH0 158 aa17.39■□□□□ 0.37
CUX1-214ENST00000550008 PRDM1O75626 825 aa17.38■□□□□ 0.37
CUX1-214ENST00000550008 FAM98CQ17RN3 349 aaKnown RBP17.38■□□□□ 0.37
CUX1-214ENST00000550008 GAS2L3Q86XJ1 694 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms