RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 C8orf58Q8NAV2 365 aa10.97□□□□□ -0.65
USP28-215ENST00000545608 ADARB2Q9NS39 739 aaKnown RBP10.97□□□□□ -0.65
USP28-215ENST00000545608 CST9Q5W186 159 aa10.96□□□□□ -0.65
USP28-215ENST00000545608 TMC4Q7Z404 712 aa10.96□□□□□ -0.65
USP28-215ENST00000545608 ABT1Q9ULW3 272 aaKnown RBP10.96□□□□□ -0.65
USP28-215ENST00000545608 NSFL1CQ9UNZ2 370 aaKnown RBP10.96□□□□□ -0.65
USP28-215ENST00000545608 WDR33Q9C0J8 1336 aaKnown RBP10.95□□□□□ -0.66
USP28-215ENST00000545608 SHTN1A0MZ66 631 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 RIMBP2O15034 1052 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 HIRAP54198 1017 aaPredicted RBP10.95□□□□□ -0.66
USP28-215ENST00000545608 GPSM2P81274 684 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 CALD1Q05682 793 aaKnown RBP10.95□□□□□ -0.66
USP28-215ENST00000545608 GOLGA2Q08379 1002 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 TNIP1Q15025 636 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 WASHC4Q2M389 1173 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 TSPYL6Q8N831 410 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 ZBTB38Q8NAP3 1195 aaPredicted RBP10.95□□□□□ -0.66
USP28-215ENST00000545608 JARID2Q92833 1246 aaPredicted RBP10.95□□□□□ -0.66
USP28-215ENST00000545608 MYD88Q99836 296 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 BCL2L13Q9BXK5 485 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 WBP1LQ9NX94 342 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 POLLQ9UGP5 575 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 LAMB2P55268 1798 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 ANKRD36CQ5JPF3 1778 aa10.95□□□□□ -0.66
USP28-215ENST00000545608 C6orf229H3BNL8 230 aa10.94□□□□□ -0.66
USP28-215ENST00000545608 RPS8P62241 208 aaKnown RBP10.94□□□□□ -0.66
USP28-215ENST00000545608 TRPM4Q8TD43 1214 aa10.94□□□□□ -0.66
USP28-215ENST00000545608 AIDAQ96BJ3 306 aa10.94□□□□□ -0.66
USP28-215ENST00000545608 GPR101Q96P66 508 aaPredicted RBP10.94□□□□□ -0.66
USP28-215ENST00000545608 GLIS2Q9BZE0 524 aaPredicted RBP10.94□□□□□ -0.66
USP28-215ENST00000545608 DBNDD1Q9H9R9 158 aa10.94□□□□□ -0.66
USP28-215ENST00000545608 SEC31BQ9NQW1 1179 aa10.94□□□□□ -0.66
USP28-215ENST00000545608 PGAP2Q9UHJ9 254 aa10.94□□□□□ -0.66
USP28-215ENST00000545608 CNOT7Q9UIV1 285 aaKnown RBP10.94□□□□□ -0.66
USP28-215ENST00000545608 COL4A1P02462 1669 aa10.94□□□□□ -0.66
USP28-215ENST00000545608 DUOX1Q9NRD9 1551 aa10.94□□□□□ -0.66
USP28-215ENST00000545608 TAF1P21675 1872 aa10.93□□□□□ -0.66
USP28-215ENST00000545608 CTCFP49711 727 aaPredicted RBP10.93□□□□□ -0.66
USP28-215ENST00000545608 DOK7Q18PE1 504 aa10.93□□□□□ -0.66
USP28-215ENST00000545608 ZNF467Q7Z7K2 595 aaPredicted RBP10.93□□□□□ -0.66
USP28-215ENST00000545608 CCDC191Q8NCU4 936 aa10.93□□□□□ -0.66
USP28-215ENST00000545608 METTL22Q9BUU2 404 aaPredicted RBP10.93□□□□□ -0.66
USP28-215ENST00000545608 PRDM10Q9NQV6 1147 aa10.93□□□□□ -0.66
USP28-215ENST00000545608 KCNQ5Q9NR82 932 aa10.93□□□□□ -0.66
USP28-215ENST00000545608 CDHR2Q9BYE9 1310 aa10.92□□□□□ -0.66
USP28-215ENST00000545608 H7C1D1 291 aa10.92□□□□□ -0.66
USP28-215ENST00000545608 PSMD14O00487 310 aa10.92□□□□□ -0.66
USP28-215ENST00000545608 PCCAP05165 728 aaPredicted RBP10.92□□□□□ -0.66
USP28-215ENST00000545608 LBX1P52954 281 aa10.92□□□□□ -0.66
USP28-215ENST00000545608 CCDC30Q5VVM6 783 aa10.92□□□□□ -0.66
USP28-215ENST00000545608 CYP4F22Q6NT55 531 aa10.92□□□□□ -0.66
USP28-215ENST00000545608 MICALL2Q8IY33 904 aa10.92□□□□□ -0.66
USP28-215ENST00000545608 TBC1D16Q8TBP0 767 aa10.92□□□□□ -0.66
USP28-215ENST00000545608 ZC3H15Q8WU90 426 aaKnown RBP10.92□□□□□ -0.66
USP28-215ENST00000545608 TSR2Q969E8 191 aaKnown RBP10.92□□□□□ -0.66
USP28-215ENST00000545608 CAPNS2Q96L46 248 aa10.92□□□□□ -0.66
USP28-215ENST00000545608 CCDC85AQ96PX6 553 aaPredicted RBP10.92□□□□□ -0.66
USP28-215ENST00000545608 TSPYL2Q9H2G4 693 aaPredicted RBP10.92□□□□□ -0.66
USP28-215ENST00000545608 TLL2Q9Y6L7 1015 aa10.92□□□□□ -0.66
USP28-215ENST00000545608 DDX60Q8IY21 1712 aaKnown RBP10.92□□□□□ -0.66
USP28-215ENST00000545608 ECE2O60344 883 aa10.91□□□□□ -0.66
USP28-215ENST00000545608 PDE8AO60658 829 aa10.91□□□□□ -0.66
USP28-215ENST00000545608 CELF2O95319 508 aaKnown RBP10.91□□□□□ -0.66
USP28-215ENST00000545608 DDX58O95786 925 aaKnown RBP10.91□□□□□ -0.66
USP28-215ENST00000545608 HSPA8P11142 646 aaKnown RBP10.91□□□□□ -0.66
USP28-215ENST00000545608 MAP2K1Q02750 393 aaPredicted RBP10.91□□□□□ -0.66
USP28-215ENST00000545608 GRM1Q13255 1194 aa10.91□□□□□ -0.66
USP28-215ENST00000545608 DLK2Q6UY11 383 aa10.91□□□□□ -0.66
USP28-215ENST00000545608 SAMD7Q7Z3H4 446 aa10.91□□□□□ -0.66
USP28-215ENST00000545608 DPF2Q92785 391 aa10.91□□□□□ -0.66
USP28-215ENST00000545608 EYA3Q99504 573 aa10.91□□□□□ -0.66
USP28-215ENST00000545608 CWC25Q9NXE8 425 aaPredicted RBP10.91□□□□□ -0.66
USP28-215ENST00000545608 MAP3K2Q9Y2U5 619 aa10.91□□□□□ -0.66
USP28-215ENST00000545608 RTL9Q8NET4 1388 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 PI4KAP2A4QPH2 592 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 EGFRP00533 1210 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 IGKV5-2P06315 115 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 HSP90B1P14625 803 aaKnown RBP10.9□□□□□ -0.66
USP28-215ENST00000545608 ECE1P42892 770 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 CCDC152Q4G0S7 254 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 KSR2Q6VAB6 950 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 CDC37L1Q7L3B6 337 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 SAPCD2Q86UD0 394 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 USP48Q86UV5 1035 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 WWC1Q8IX03 1113 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 PI4KAP1Q8N8J0 262 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 ZC3H12CQ9C0D7 883 aaKnown RBP10.9□□□□□ -0.66
USP28-215ENST00000545608 PODXL2Q9NZ53 605 aa10.9□□□□□ -0.66
USP28-215ENST00000545608 LRRC37AA6NMS7 1700 aa10.89□□□□□ -0.67
USP28-215ENST00000545608 AOC2O75106 756 aa10.89□□□□□ -0.67
USP28-215ENST00000545608 UFL1O94874 794 aa10.89□□□□□ -0.67
USP28-215ENST00000545608 CCDC27Q2M243 656 aa10.89□□□□□ -0.67
USP28-215ENST00000545608 TBC1D10BQ4KMP7 808 aaPredicted RBP10.89□□□□□ -0.67
USP28-215ENST00000545608 RBM26Q5T8P6 1007 aaKnown RBP10.89□□□□□ -0.67
USP28-215ENST00000545608 G2E3Q7L622 706 aa10.89□□□□□ -0.67
USP28-215ENST00000545608 CHMP4AQ9BY43 222 aa10.89□□□□□ -0.67
USP28-215ENST00000545608 ZNF408Q9H9D4 720 aa10.89□□□□□ -0.67
USP28-215ENST00000545608 ANKIB1Q9P2G1 1089 aa10.89□□□□□ -0.67
USP28-215ENST00000545608 FARP1Q9Y4F1 1045 aaPredicted RBP10.89□□□□□ -0.67
USP28-215ENST00000545608 WTIPA6NIX2 430 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms