RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ZMYM1Q5SVZ6 1142 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 FBXL16Q8N461 479 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 RGS22Q8NE09 1264 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 PAG1Q9NWQ8 432 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 BTG4Q9NY30 223 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 CEP126Q9P2H0 1117 aa11.76□□□□□ -0.53
SS18-205ENST00000542420 COL5A3P25940 1745 aaPredicted RBP11.75□□□□□ -0.53
SS18-205ENST00000542420 DOCK2Q92608 1830 aa11.75□□□□□ -0.53
SS18-205ENST00000542420 SYT1P21579 422 aa11.75□□□□□ -0.53
SS18-205ENST00000542420 IL6STP40189 918 aaPredicted RBP11.75□□□□□ -0.53
SS18-205ENST00000542420 CCDC57Q2TAC2 916 aa11.75□□□□□ -0.53
SS18-205ENST00000542420 CAVIN1Q6NZI2 390 aaKnown RBP11.75□□□□□ -0.53
SS18-205ENST00000542420 RGL2O15211 777 aa11.75□□□□□ -0.53
SS18-205ENST00000542420 PIP4K2AP48426 406 aaPredicted RBP11.75□□□□□ -0.53
SS18-205ENST00000542420 ZBTB3Q9H5J0 574 aa11.75□□□□□ -0.53
SS18-205ENST00000542420 EXOC5O00471 708 aa11.74□□□□□ -0.53
SS18-205ENST00000542420 CYP19A1P11511 503 aaPredicted RBP11.74□□□□□ -0.53
SS18-205ENST00000542420 NASPP49321 788 aaPredicted RBP11.74□□□□□ -0.53
SS18-205ENST00000542420 LLPHQ9BRT6 129 aaKnown RBP11.74□□□□□ -0.53
SS18-205ENST00000542420 ATRNO75882 1429 aa11.74□□□□□ -0.53
SS18-205ENST00000542420 ELP1O95163 1332 aa11.74□□□□□ -0.53
SS18-205ENST00000542420 HSP90B1P14625 803 aaKnown RBP11.74□□□□□ -0.53
SS18-205ENST00000542420 GJB2P29033 226 aa11.74□□□□□ -0.53
SS18-205ENST00000542420 UBE2HP62256 183 aa11.74□□□□□ -0.53
SS18-205ENST00000542420 CCDC158Q5M9N0 1113 aa11.74□□□□□ -0.53
SS18-205ENST00000542420 ZNF589Q86UQ0 364 aaPredicted RBP11.74□□□□□ -0.53
SS18-205ENST00000542420 DNAJC10Q8IXB1 793 aa11.74□□□□□ -0.53
SS18-205ENST00000542420 NEK1Q96PY6 1258 aa11.74□□□□□ -0.53
SS18-205ENST00000542420 AGXT2Q9BYV1 514 aa11.74□□□□□ -0.53
SS18-205ENST00000542420 PRDM4Q9UKN5 801 aa11.74□□□□□ -0.53
SS18-205ENST00000542420 A0A1B0GUL7 405 aa11.73□□□□□ -0.53
SS18-205ENST00000542420 RNF113AO15541 343 aaKnown RBP11.73□□□□□ -0.53
SS18-205ENST00000542420 RBM10P98175 930 aaKnown RBP11.73□□□□□ -0.53
SS18-205ENST00000542420 ME3Q16798 604 aa11.73□□□□□ -0.53
SS18-205ENST00000542420 FAM184AQ8NB25 1140 aa11.73□□□□□ -0.53
SS18-205ENST00000542420 MTMR6Q9Y217 621 aa11.73□□□□□ -0.53
SS18-205ENST00000542420 CHMP3Q9Y3E7 222 aa11.73□□□□□ -0.53
SS18-205ENST00000542420 RIC1Q4ADV7 1423 aa11.73□□□□□ -0.53
SS18-205ENST00000542420 IFIT1P09914 478 aaKnown RBP11.72□□□□□ -0.53
SS18-205ENST00000542420 IFIT5Q13325 482 aaKnown RBP11.72□□□□□ -0.53
SS18-205ENST00000542420 CCDC83Q8IWF9 413 aa11.72□□□□□ -0.53
SS18-205ENST00000542420 NAP1L5Q96NT1 182 aaPredicted RBP11.72□□□□□ -0.53
SS18-205ENST00000542420 RTL9Q8NET4 1388 aa11.72□□□□□ -0.53
SS18-205ENST00000542420 WDR19Q8NEZ3 1342 aa11.72□□□□□ -0.53
SS18-205ENST00000542420 TOB2Q14106 344 aaPredicted RBP11.72□□□□□ -0.53
SS18-205ENST00000542420 PPP4R3CPQ6ZMV5 832 aa11.72□□□□□ -0.53
SS18-205ENST00000542420 NOL8Q76FK4 1167 aaKnown RBP11.72□□□□□ -0.53
SS18-205ENST00000542420 NLRP10Q86W26 655 aa11.72□□□□□ -0.53
SS18-205ENST00000542420 DNAJC2Q99543 621 aaKnown RBP11.72□□□□□ -0.53
SS18-205ENST00000542420 TMEM63CQ9P1W3 806 aa11.72□□□□□ -0.53
SS18-205ENST00000542420 CTNNA3Q9UI47 895 aa11.72□□□□□ -0.53
SS18-205ENST00000542420 ASAP1Q9ULH1 1129 aa11.72□□□□□ -0.53
SS18-205ENST00000542420 TPCN1Q9ULQ1 816 aa11.72□□□□□ -0.53
SS18-205ENST00000542420 KIF3AQ9Y496 699 aa11.72□□□□□ -0.53
SS18-205ENST00000542420 LARGE1O95461 756 aa11.71□□□□□ -0.53
SS18-205ENST00000542420 ST3GAL1Q11201 340 aa11.71□□□□□ -0.53
SS18-205ENST00000542420 UVSSAQ2YD98 709 aa11.71□□□□□ -0.53
SS18-205ENST00000542420 ZSCAN25Q6NSZ9 544 aa11.71□□□□□ -0.53
SS18-205ENST00000542420 PANK2Q9BZ23 570 aa11.71□□□□□ -0.53
SS18-205ENST00000542420 CCDC183Q5T5S1 534 aa11.71□□□□□ -0.54
SS18-205ENST00000542420 USP48Q86UV5 1035 aa11.71□□□□□ -0.54
SS18-205ENST00000542420 JARID2Q92833 1246 aaPredicted RBP11.71□□□□□ -0.54
SS18-205ENST00000542420 GTF3C6Q969F1 213 aa11.71□□□□□ -0.54
SS18-205ENST00000542420 PDE8AO60658 829 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 TTF1Q15361 905 aaPredicted RBP11.7□□□□□ -0.54
SS18-205ENST00000542420 LRRC24Q50LG9 513 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 TRIM44Q96DX7 344 aaPredicted RBP11.7□□□□□ -0.54
SS18-205ENST00000542420 PDLIM2Q96JY6 352 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 NEUROD6Q96NK8 337 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 CHD4Q14839 1912 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 A0A1B0GUL6 1792 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 SPATA31A1Q5TZJ5 1347 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 ANKRD18BA2A2Z9 1011 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 CYP21A2P08686 494 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 CTSWP56202 376 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 TTC39AQ5SRH9 613 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 BARGINQ6ZT62 677 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 DHX32Q7L7V1 743 aaKnown RBP11.7□□□□□ -0.54
SS18-205ENST00000542420 ZNF34Q8IZ26 560 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 RIPOR2Q9Y4F9 1068 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 SLIT2O94813 1529 aa11.7□□□□□ -0.54
SS18-205ENST00000542420 GOLIM4O00461 696 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 EVCP57679 992 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 HMGN5P82970 282 aaKnown RBP11.69□□□□□ -0.54
SS18-205ENST00000542420 PARP10Q53GL7 1025 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 ATL3Q6DD88 541 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 DDX46Q7L014 1031 aaKnown RBP11.69□□□□□ -0.54
SS18-205ENST00000542420 SMARCC2Q8TAQ2 1214 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 ZMYM6O95789 1325 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 MROH5Q6ZUA9 1318 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 CASZ1Q86V15 1759 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 PFKFB2O60825 505 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 UQCRFS1P1P0C7P4 283 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 KRT85P78386 507 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 EXOSC10Q01780 885 aaKnown RBP11.69□□□□□ -0.54
SS18-205ENST00000542420 TAF7LQ5H9L4 462 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 LARP1BQ659C4 914 aaKnown RBP11.69□□□□□ -0.54
SS18-205ENST00000542420 TTLL11Q8NHH1 800 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 APPBP2Q92624 585 aa11.69□□□□□ -0.54
SS18-205ENST00000542420 EDC3Q96F86 508 aaKnown RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms