RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZNF609O15014 1411 aa17.6■□□□□ 0.41
SS18-204ENST00000539244 VIL1P09327 827 aaKnown RBP17.59■□□□□ 0.41
SS18-204ENST00000539244 HUNKP57058 714 aa17.59■□□□□ 0.41
SS18-204ENST00000539244 GNAI1P63096 354 aa17.59■□□□□ 0.41
SS18-204ENST00000539244 KRT26Q7Z3Y9 468 aa17.59■□□□□ 0.41
SS18-204ENST00000539244 CCDC191Q8NCU4 936 aa17.59■□□□□ 0.41
SS18-204ENST00000539244 PHAXQ9H814 394 aaKnown RBP17.59■□□□□ 0.41
SS18-204ENST00000539244 KCNQ5Q9NR82 932 aa17.59■□□□□ 0.41
SS18-204ENST00000539244 TSKSQ9UJT2 592 aa17.59■□□□□ 0.41
SS18-204ENST00000539244 PSME4Q14997 1843 aa17.58■□□□□ 0.41
SS18-204ENST00000539244 PCCAP05165 728 aaPredicted RBP17.58■□□□□ 0.4
SS18-204ENST00000539244 CALD1Q05682 793 aaKnown RBP17.58■□□□□ 0.4
SS18-204ENST00000539244 DOK7Q18PE1 504 aa17.58■□□□□ 0.4
SS18-204ENST00000539244 TBC1D10BQ4KMP7 808 aaPredicted RBP17.58■□□□□ 0.4
SS18-204ENST00000539244 ZC3H12CQ9C0D7 883 aaKnown RBP17.58■□□□□ 0.4
SS18-204ENST00000539244 PRKRIP1Q9H875 184 aaPredicted RBP17.58■□□□□ 0.4
SS18-204ENST00000539244 CASP8AP2Q9UKL3 1982 aa17.58■□□□□ 0.4
SS18-204ENST00000539244 CCDC152Q4G0S7 254 aa17.57■□□□□ 0.4
SS18-204ENST00000539244 DLK2Q6UY11 383 aa17.57■□□□□ 0.4
SS18-204ENST00000539244 DCPSQ96C86 337 aaKnown RBP17.57■□□□□ 0.4
SS18-204ENST00000539244 MYD88Q99836 296 aa17.57■□□□□ 0.4
SS18-204ENST00000539244 GBA2Q9HCG7 927 aaPredicted RBP17.57■□□□□ 0.4
SS18-204ENST00000539244 SEC31BQ9NQW1 1179 aa17.57■□□□□ 0.4
SS18-204ENST00000539244 FAM155AB1AL88 458 aaPredicted RBP17.56■□□□□ 0.4
SS18-204ENST00000539244 APAF1O14727 1248 aa17.56■□□□□ 0.4
SS18-204ENST00000539244 PDE8AO60658 829 aa17.56■□□□□ 0.4
SS18-204ENST00000539244 RGS19P49795 217 aa17.56■□□□□ 0.4
SS18-204ENST00000539244 KIF4BQ2VIQ3 1234 aa17.56■□□□□ 0.4
SS18-204ENST00000539244 ZIC5Q96T25 663 aa17.56■□□□□ 0.4
SS18-204ENST00000539244 GGA1Q9UJY5 639 aa17.56■□□□□ 0.4
SS18-204ENST00000539244 UFL1O94874 794 aa17.55■□□□□ 0.4
SS18-204ENST00000539244 RGMBQ6NW40 437 aa17.55■□□□□ 0.4
SS18-204ENST00000539244 METTL22Q9BUU2 404 aaPredicted RBP17.55■□□□□ 0.4
SS18-204ENST00000539244 CHMP4AQ9BY43 222 aa17.55■□□□□ 0.4
SS18-204ENST00000539244 CWC25Q9NXE8 425 aaPredicted RBP17.55■□□□□ 0.4
SS18-204ENST00000539244 ANKIB1Q9P2G1 1089 aa17.55■□□□□ 0.4
SS18-204ENST00000539244 ADM5C9JUS6 153 aa17.54■□□□□ 0.4
SS18-204ENST00000539244 ELL2O00472 640 aaPredicted RBP17.54■□□□□ 0.4
SS18-204ENST00000539244 ZNF280AP59817 542 aaPredicted RBP17.54■□□□□ 0.4
SS18-204ENST00000539244 RBM26Q5T8P6 1007 aaKnown RBP17.54■□□□□ 0.4
SS18-204ENST00000539244 C2orf69Q8N8R5 385 aa17.54■□□□□ 0.4
SS18-204ENST00000539244 C8orf58Q8NAV2 365 aa17.54■□□□□ 0.4
SS18-204ENST00000539244 AGBL3Q8NEM8 1001 aa17.54■□□□□ 0.4
SS18-204ENST00000539244 MCOLN1Q9GZU1 580 aa17.54■□□□□ 0.4
SS18-204ENST00000539244 XDHP47989 1333 aa17.53■□□□□ 0.4
SS18-204ENST00000539244 CCDC85CA6NKD9 419 aa17.53■□□□□ 0.4
SS18-204ENST00000539244 DDX58O95786 925 aaKnown RBP17.53■□□□□ 0.4
SS18-204ENST00000539244 FAM161AQ3B820 660 aa17.53■□□□□ 0.4
SS18-204ENST00000539244 CCDC30Q5VVM6 783 aa17.53■□□□□ 0.4
SS18-204ENST00000539244 RSBN1LQ6PCB5 846 aaPredicted RBP17.53■□□□□ 0.4
SS18-204ENST00000539244 CCDC102AQ96A19 550 aa17.53■□□□□ 0.4
SS18-204ENST00000539244 SAGE1Q9NXZ1 904 aa17.53■□□□□ 0.4
SS18-204ENST00000539244 GGA3Q9NZ52 723 aa17.53■□□□□ 0.4
SS18-204ENST00000539244 SULF1Q8IWU6 871 aa17.52■□□□□ 0.4
SS18-204ENST00000539244 GMLQ99445 158 aa17.52■□□□□ 0.4
SS18-204ENST00000539244 MYH3P11055 1940 aa17.51■□□□□ 0.39
SS18-204ENST00000539244 G3V3G9 751 aa17.51■□□□□ 0.39
SS18-204ENST00000539244 ATP2B4P23634 1241 aa17.51■□□□□ 0.39
SS18-204ENST00000539244 DCAF8Q5TAQ9 597 aa17.51■□□□□ 0.39
SS18-204ENST00000539244 PODNQ7Z5L7 613 aa17.51■□□□□ 0.39
SS18-204ENST00000539244 ANKRD18AQ8IVF6 992 aa17.51■□□□□ 0.39
SS18-204ENST00000539244 ASTN2O75129 1339 aaPredicted RBP17.5■□□□□ 0.39
SS18-204ENST00000539244 SLC10A3P09131 477 aa17.5■□□□□ 0.39
SS18-204ENST00000539244 MLLT1Q03111 559 aaPredicted RBP17.5■□□□□ 0.39
SS18-204ENST00000539244 MAP3K2Q9Y2U5 619 aa17.5■□□□□ 0.39
SS18-204ENST00000539244 PITPNM2Q9BZ72 1349 aa17.49■□□□□ 0.39
SS18-204ENST00000539244 AKAP11Q9UKA4 1901 aa17.49■□□□□ 0.39
SS18-204ENST00000539244 IGKV5-2P06315 115 aa17.49■□□□□ 0.39
SS18-204ENST00000539244 ZNF157P51786 506 aaPredicted RBP17.49■□□□□ 0.39
SS18-204ENST00000539244 CTSWP56202 376 aa17.49■□□□□ 0.39
SS18-204ENST00000539244 KIF23Q02241 960 aaPredicted RBP17.49■□□□□ 0.39
SS18-204ENST00000539244 SCARF1Q14162 830 aa17.49■□□□□ 0.39
SS18-204ENST00000539244 KSR2Q6VAB6 950 aa17.49■□□□□ 0.39
SS18-204ENST00000539244 JARID2Q92833 1246 aaPredicted RBP17.49■□□□□ 0.39
SS18-204ENST00000539244 CDCA5Q96FF9 252 aa17.49■□□□□ 0.39
SS18-204ENST00000539244 CCDC85AQ96PX6 553 aaPredicted RBP17.49■□□□□ 0.39
SS18-204ENST00000539244 CDC5LQ99459 802 aaKnown RBP17.49■□□□□ 0.39
SS18-204ENST00000539244 MED23Q9ULK4 1368 aa17.49■□□□□ 0.39
SS18-204ENST00000539244 PAPPA2Q9BXP8 1791 aa17.48■□□□□ 0.39
SS18-204ENST00000539244 USP17L3A6NCW0 530 aa17.48■□□□□ 0.39
SS18-204ENST00000539244 USP17L4A6NCW7 530 aa17.48■□□□□ 0.39
SS18-204ENST00000539244 USP17L8P0C7I0 530 aa17.48■□□□□ 0.39
SS18-204ENST00000539244 FKBP1BP68106 108 aa17.48■□□□□ 0.39
SS18-204ENST00000539244 DGKZQ13574 1117 aa17.48■□□□□ 0.39
SS18-204ENST00000539244 ANGEL2Q5VTE6 544 aaKnown RBP17.48■□□□□ 0.39
SS18-204ENST00000539244 USP17L1Q7RTZ2 530 aa17.48■□□□□ 0.39
SS18-204ENST00000539244 TSPYL6Q8N831 410 aa17.48■□□□□ 0.39
SS18-204ENST00000539244 TTLL11Q8NHH1 800 aa17.48■□□□□ 0.39
SS18-204ENST00000539244 MYOZ2Q9NPC6 264 aa17.48■□□□□ 0.39
SS18-204ENST00000539244 BSDC1Q9NW68 430 aaPredicted RBP17.48■□□□□ 0.39
SS18-204ENST00000539244 ZNF646O15015 1829 aaPredicted RBP17.48■□□□□ 0.39
SS18-204ENST00000539244 PI4KAP2A4QPH2 592 aa17.47■□□□□ 0.39
SS18-204ENST00000539244 PI4KAP1Q8N8J0 262 aa17.47■□□□□ 0.39
SS18-204ENST00000539244 RNF186Q9NXI6 227 aa17.47■□□□□ 0.39
SS18-204ENST00000539244 MINPP1Q9UNW1 487 aa17.47■□□□□ 0.39
SS18-204ENST00000539244 REM2Q8IYK8 340 aaPredicted RBP17.46■□□□□ 0.39
SS18-204ENST00000539244 CSRNP1Q96S65 589 aa17.46■□□□□ 0.39
SS18-204ENST00000539244 SPEF2Q9C093 1822 aa17.45■□□□□ 0.38
SS18-204ENST00000539244 NEXNQ0ZGT2 675 aa17.45■□□□□ 0.38
SS18-204ENST00000539244 CCDC27Q2M243 656 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms