RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 EIF3CQ99613 913 aaKnown RBP4.41□□□□□ -1.7
MCF2-210ENST00000536274 PLCD4Q9BRC7 762 aa4.41□□□□□ -1.7
MCF2-210ENST00000536274 CHD4Q14839 1912 aa4.4□□□□□ -1.7
MCF2-210ENST00000536274 TESPA1A2RU30 521 aaPredicted RBP4.4□□□□□ -1.7
MCF2-210ENST00000536274 SEMA3EO15041 775 aa4.4□□□□□ -1.7
MCF2-210ENST00000536274 HOXB3P14651 431 aaPredicted RBP4.4□□□□□ -1.7
MCF2-210ENST00000536274 ARHGAP29Q52LW3 1261 aa4.4□□□□□ -1.7
MCF2-210ENST00000536274 FBXW10Q5XX13 1052 aa4.4□□□□□ -1.7
MCF2-210ENST00000536274 MS4A4AQ96JQ5 239 aa4.4□□□□□ -1.7
MCF2-210ENST00000536274 RAI14Q9P0K7 980 aa4.4□□□□□ -1.7
MCF2-210ENST00000536274 PLEKHG2Q9H7P9 1386 aa4.4□□□□□ -1.7
MCF2-210ENST00000536274 FIBPO43427 364 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 CAND2O75155 1236 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 NEBLO76041 1014 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 HMGB2P26583 209 aaKnown RBP4.4□□□□□ -1.71
MCF2-210ENST00000536274 MVPQ14764 893 aaKnown RBP4.4□□□□□ -1.71
MCF2-210ENST00000536274 ZSCAN25Q6NSZ9 544 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 TICAM2Q86XR7 235 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 CKAP2LQ8IYA6 745 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 MICALL1Q8N3F8 863 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 ANKRD20A12PQ8NF67 263 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 OTUD7AQ8TE49 926 aaPredicted RBP4.4□□□□□ -1.71
MCF2-210ENST00000536274 KAT2BQ92831 832 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 POLR3AO14802 1390 aaPredicted RBP4.4□□□□□ -1.71
MCF2-210ENST00000536274 TCHHQ07283 1943 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 EME2A4GXA9 379 aaPredicted RBP4.4□□□□□ -1.71
MCF2-210ENST00000536274 PHACTR2O75167 634 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 MNAT1P51948 309 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 LCE2DQ5TA82 110 aaPredicted RBP4.4□□□□□ -1.71
MCF2-210ENST00000536274 CPLX2Q6PUV4 134 aaKnown RBP4.4□□□□□ -1.71
MCF2-210ENST00000536274 ZNF687Q8N1G0 1237 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 TXLNBQ8N3L3 684 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 FBXW7Q969H0 707 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 HS3ST6Q96QI5 342 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 BRMS1Q9HCU9 246 aa4.4□□□□□ -1.71
MCF2-210ENST00000536274 THRAP3Q9Y2W1 955 aaKnown RBP4.4□□□□□ -1.71
MCF2-210ENST00000536274 FAM205CA6NFA0 338 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 H3BQF6 201 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 MPHOSPH10O00566 681 aaKnown RBP4.39□□□□□ -1.71
MCF2-210ENST00000536274 N4BP1O75113 896 aaKnown RBP4.39□□□□□ -1.71
MCF2-210ENST00000536274 MUM1L1Q5H9M0 696 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 NBPF6Q5VWK0 638 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 CCDC91Q7Z6B0 441 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 MORC1Q86VD1 984 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 CHD1LQ86WJ1 897 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 TMEM57Q8N5G2 664 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 FBXO18Q8NFZ0 1043 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 THOC1Q96FV9 657 aaKnown RBP4.39□□□□□ -1.71
MCF2-210ENST00000536274 NBPF4Q96M43 638 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 CICQ96RK0 1608 aaPredicted RBP4.39□□□□□ -1.71
MCF2-210ENST00000536274 GSPT1P15170 499 aaKnown RBP4.39□□□□□ -1.71
MCF2-210ENST00000536274 ATP6V1AP38606 617 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 BAG6P46379 1132 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 LIG3P49916 1009 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 GSCP56915 257 aaPredicted RBP4.39□□□□□ -1.71
MCF2-210ENST00000536274 WWC2Q6AWC2 1192 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 BARGINQ6ZT62 677 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 DZIP1LQ8IYY4 767 aaKnown RBP4.39□□□□□ -1.71
MCF2-210ENST00000536274 MON2Q7Z3U7 1717 aa4.39□□□□□ -1.71
MCF2-210ENST00000536274 MBD3O95983 291 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 TRIM27P14373 513 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 ARID4AP29374 1257 aaPredicted RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 NEK4P51957 841 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 CCT2P78371 535 aaKnown RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 SNX1Q13596 522 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 PTPN21Q16825 1174 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 TEX35Q5T0J7 233 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 MCTP2Q6DN12 878 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 FILIP1Q7Z7B0 1213 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 FAM177A1Q8N128 213 aaPredicted RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 GOLGA6L1Q8N7Z2 621 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 JPH2Q9BR39 696 aaPredicted RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 TRIM5Q9C035 493 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 IRAK4Q9NWZ3 460 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 ADAM21Q9UKJ8 722 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 G3BP2Q9UN86 482 aaKnown RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 ZNF831Q5JPB2 1677 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 IFIT2P09913 472 aaKnown RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 H2AFXP16104 143 aaPredicted RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 MAGEA9P43362 315 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 SMC1AQ14683 1233 aaKnown RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 PTPN14Q15678 1187 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 CTR9Q6PD62 1173 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 DNAJC14Q6Y2X3 702 aaPredicted RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 TMX3Q96JJ7 454 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 UPF3BQ9BZI7 483 aaKnown RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 INSRP06213 1382 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 AP1G2O75843 785 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 SLU7O95391 586 aaKnown RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 EIF2S2P20042 333 aaKnown RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 CASTP20810 708 aaKnown RBP4.38□□□□□ -1.71
MCF2-210ENST00000536274 MCM2P49736 904 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 NUCB1Q02818 461 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 FAM173BQ6P4H8 233 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 ZNF428Q96B54 188 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 ZSWIM4Q9H7M6 989 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 SUGCTQ9HAC7 445 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 MED4Q9NPJ6 270 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 VPS18Q9P253 973 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 USP16Q9Y5T5 823 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms