RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 BRF1Q92994 677 aa22.77■■□□□ 1.24
VPS28-213ENST00000530983 RESTQ13127 1097 aa22.77■■□□□ 1.24
VPS28-213ENST00000530983 LUZP1Q86V48 1076 aa22.77■■□□□ 1.24
VPS28-213ENST00000530983 PGBD1Q96JS3 809 aa22.77■■□□□ 1.24
VPS28-213ENST00000530983 PRIMPOLQ96LW4 560 aa22.77■■□□□ 1.24
VPS28-213ENST00000530983 DDX19AQ9NUU7 478 aaKnown RBP22.77■■□□□ 1.24
VPS28-213ENST00000530983 SPC24Q8NBT2 197 aa22.76■■□□□ 1.23
VPS28-213ENST00000530983 KIAA1524Q8TCG1 905 aa22.76■■□□□ 1.23
VPS28-213ENST00000530983 CLSTN2Q9H4D0 955 aa22.76■■□□□ 1.23
VPS28-213ENST00000530983 LMBR1LQ6UX01 489 aa22.76■■□□□ 1.23
VPS28-213ENST00000530983 STOX1Q6ZVD7 989 aa22.76■■□□□ 1.23
VPS28-213ENST00000530983 PLBD2Q8NHP8 589 aa22.76■■□□□ 1.23
VPS28-213ENST00000530983 SH3TC1Q8TE82 1336 aa22.75■■□□□ 1.23
VPS28-213ENST00000530983 KBTBD3Q8NAB2 608 aa22.75■■□□□ 1.23
VPS28-213ENST00000530983 PYCARDQ9ULZ3 195 aa22.75■■□□□ 1.23
VPS28-213ENST00000530983 MYH15Q9Y2K3 1946 aa22.75■■□□□ 1.23
VPS28-213ENST00000530983 NR1I2O75469 434 aa22.75■■□□□ 1.23
VPS28-213ENST00000530983 TPM3P06753 285 aa22.75■■□□□ 1.23
VPS28-213ENST00000530983 CSB-PGBD3P0DP91 1061 aa22.75■■□□□ 1.23
VPS28-213ENST00000530983 HSP90B1P14625 803 aaKnown RBP22.75■■□□□ 1.23
VPS28-213ENST00000530983 SCRN1Q12765 414 aa22.75■■□□□ 1.23
VPS28-213ENST00000530983 ANO6Q4KMQ2 910 aa22.75■■□□□ 1.23
VPS28-213ENST00000530983 DDX17Q92841 729 aaKnown RBP22.75■■□□□ 1.23
VPS28-213ENST00000530983 LRRC2Q9BYS8 371 aa22.75■■□□□ 1.23
VPS28-213ENST00000530983 DDX11Q96FC9 970 aa22.74■■□□□ 1.23
VPS28-213ENST00000530983 CBX8Q9HC52 389 aa22.74■■□□□ 1.23
VPS28-213ENST00000530983 FOXO4P98177 505 aa22.74■■□□□ 1.23
VPS28-213ENST00000530983 PALLDQ8WX93 1383 aa22.74■■□□□ 1.23
VPS28-213ENST00000530983 SMAP1Q8IYB5 467 aaPredicted RBP22.73■■□□□ 1.23
VPS28-213ENST00000530983 SMARCC2Q8TAQ2 1214 aa22.73■■□□□ 1.23
VPS28-213ENST00000530983 PLEKHG2Q9H7P9 1386 aa22.73■■□□□ 1.23
VPS28-213ENST00000530983 GOLGA6L6A8MZA4 724 aa22.73■■□□□ 1.23
VPS28-213ENST00000530983 HMGN5P82970 282 aaKnown RBP22.73■■□□□ 1.23
VPS28-213ENST00000530983 ATG9AQ7Z3C6 839 aa22.73■■□□□ 1.23
VPS28-213ENST00000530983 CCDC9Q9Y3X0 531 aaKnown RBP22.73■■□□□ 1.23
VPS28-213ENST00000530983 SLFNL1Q499Z3 407 aa22.72■■□□□ 1.23
VPS28-213ENST00000530983 BICD2Q8TD16 824 aa22.72■■□□□ 1.23
VPS28-213ENST00000530983 CABLES1Q8TDN4 633 aa22.72■■□□□ 1.23
VPS28-213ENST00000530983 TJP1Q07157 1748 aa22.71■■□□□ 1.23
VPS28-213ENST00000530983 H3BQV1 296 aa22.71■■□□□ 1.23
VPS28-213ENST00000530983 GTF2F1P35269 517 aaKnown RBP eCLIP22.71■■□□□ 1.23
VPS28-213ENST00000530983 CABP4P57796 275 aa22.71■■□□□ 1.23
VPS28-213ENST00000530983 CHRNA2Q15822 529 aa22.71■■□□□ 1.23
VPS28-213ENST00000530983 IFFO2Q5TF58 517 aa22.71■■□□□ 1.23
VPS28-213ENST00000530983 ZSCAN16Q9H4T2 348 aaPredicted RBP22.71■■□□□ 1.23
VPS28-213ENST00000530983 NUP188Q5SRE5 1749 aa22.71■■□□□ 1.23
VPS28-213ENST00000530983 H7C1W4 665 aa22.71■■□□□ 1.23
VPS28-213ENST00000530983 PFKFB2O60825 505 aa22.71■■□□□ 1.23
VPS28-213ENST00000530983 PARP4Q9UKK3 1724 aaKnown RBP22.71■■□□□ 1.23
VPS28-213ENST00000530983 NBPF26B4DH59 902 aa22.7■■□□□ 1.22
VPS28-213ENST00000530983 GOLIM4O00461 696 aa22.7■■□□□ 1.22
VPS28-213ENST00000530983 NBPF14Q5TI25 921 aa22.7■■□□□ 1.22
VPS28-213ENST00000530983 NBPF10Q6P3W6 841 aaKnown RBP22.7■■□□□ 1.22
VPS28-213ENST00000530983 NBPF15Q8N660 670 aa22.7■■□□□ 1.22
VPS28-213ENST00000530983 PAG1Q9NWQ8 432 aa22.7■■□□□ 1.22
VPS28-213ENST00000530983 HMGB1P09429 215 aaKnown RBP22.7■■□□□ 1.22
VPS28-213ENST00000530983 ATF3P18847 181 aa22.7■■□□□ 1.22
VPS28-213ENST00000530983 DHX32Q7L7V1 743 aaKnown RBP22.7■■□□□ 1.22
VPS28-213ENST00000530983 NSUN7Q8NE18 718 aaKnown RBP22.7■■□□□ 1.22
VPS28-213ENST00000530983 LLPHQ9BRT6 129 aaKnown RBP22.7■■□□□ 1.22
VPS28-213ENST00000530983 FGD1P98174 961 aa22.69■■□□□ 1.22
VPS28-213ENST00000530983 NEUROD6Q96NK8 337 aa22.69■■□□□ 1.22
VPS28-213ENST00000530983 HELLSQ9NRZ9 838 aa22.69■■□□□ 1.22
VPS28-213ENST00000530983 CTDNEP1O95476 244 aa22.69■■□□□ 1.22
VPS28-213ENST00000530983 PTGS1P23219 599 aa22.69■■□□□ 1.22
VPS28-213ENST00000530983 ADD1P35611 737 aaKnown RBP22.69■■□□□ 1.22
VPS28-213ENST00000530983 CFAP45Q9UL16 551 aa22.69■■□□□ 1.22
VPS28-213ENST00000530983 DCCP43146 1447 aa22.68■■□□□ 1.22
VPS28-213ENST00000530983 TIMM10P62072 90 aa22.68■■□□□ 1.22
VPS28-213ENST00000530983 TDRD7Q8NHU6 1098 aaKnown RBP22.68■■□□□ 1.22
VPS28-213ENST00000530983 DSCC1Q9BVC3 393 aa22.68■■□□□ 1.22
VPS28-213ENST00000530983 TSC1Q92574 1164 aa22.68■■□□□ 1.22
VPS28-213ENST00000530983 AGXT2Q9BYV1 514 aa22.68■■□□□ 1.22
VPS28-213ENST00000530983 GPR108Q9NPR9 543 aa22.68■■□□□ 1.22
VPS28-213ENST00000530983 A0A0G2JLW4 131 aa22.67■■□□□ 1.22
VPS28-213ENST00000530983 EXOSC10Q01780 885 aaKnown RBP22.67■■□□□ 1.22
VPS28-213ENST00000530983 APOBRQ0VD83 1088 aa22.67■■□□□ 1.22
VPS28-213ENST00000530983 PLA2G4DQ86XP0 818 aa22.67■■□□□ 1.22
VPS28-213ENST00000530983 DNAJC25Q9H1X3 360 aa22.67■■□□□ 1.22
VPS28-213ENST00000530983 ZMYM1Q5SVZ6 1142 aa22.66■■□□□ 1.22
VPS28-213ENST00000530983 NAA16Q6N069 864 aaPredicted RBP22.66■■□□□ 1.22
VPS28-213ENST00000530983 TTLL7Q6ZT98 887 aa22.66■■□□□ 1.22
VPS28-213ENST00000530983 CCDC94Q9BW85 323 aaPredicted RBP22.66■■□□□ 1.22
VPS28-213ENST00000530983 ZNF165P49910 485 aa22.66■■□□□ 1.22
VPS28-213ENST00000530983 PRDM10Q9NQV6 1147 aa22.66■■□□□ 1.22
VPS28-213ENST00000530983 PTPDC1A2A3K4 754 aa22.65■■□□□ 1.22
VPS28-213ENST00000530983 CEBPZQ03701 1054 aaKnown RBP22.65■■□□□ 1.22
VPS28-213ENST00000530983 TMEM94Q12767 1356 aa22.65■■□□□ 1.22
VPS28-213ENST00000530983 CWC25Q9NXE8 425 aaPredicted RBP22.65■■□□□ 1.22
VPS28-213ENST00000530983 UBR2Q8IWV8 1755 aa22.65■■□□□ 1.22
VPS28-213ENST00000530983 HSPD1P10809 573 aaKnown RBP22.65■■□□□ 1.22
VPS28-213ENST00000530983 IL15P40933 162 aaPredicted RBP22.65■■□□□ 1.22
VPS28-213ENST00000530983 ZNF75DP51815 510 aa22.65■■□□□ 1.22
VPS28-213ENST00000530983 FTOQ9C0B1 505 aaKnown RBP eCLIP22.65■■□□□ 1.221e-6■■□□□ 11.8
VPS28-213ENST00000530983 SALL1Q9NSC2 1324 aa22.64■■□□□ 1.22
VPS28-213ENST00000530983 LRRC24Q50LG9 513 aa22.64■■□□□ 1.22
VPS28-213ENST00000530983 CCDC186Q7Z3E2 898 aa22.64■■□□□ 1.22
VPS28-213ENST00000530983 ZNF710Q8N1W2 664 aa22.64■■□□□ 1.22
VPS28-213ENST00000530983 TRIM5Q9C035 493 aa22.64■■□□□ 1.22
VPS28-213ENST00000530983 SPEF2Q9C093 1822 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms