RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 AMIGO3Q86WK7 504 aa7.74□□□□□ -1.17
PTPN4-210ENST00000485247 TRIM47Q96LD4 638 aa7.74□□□□□ -1.17
PTPN4-210ENST00000485247 TRIM34Q9BYJ4 488 aa7.74□□□□□ -1.17
PTPN4-210ENST00000485247 KDM2BQ8NHM5 1336 aa7.74□□□□□ -1.17
PTPN4-210ENST00000485247 NFAT5O94916 1531 aa7.73□□□□□ -1.17
PTPN4-210ENST00000485247 A0A0G2JLW4 131 aa7.73□□□□□ -1.17
PTPN4-210ENST00000485247 FSHRP23945 695 aa7.73□□□□□ -1.17
PTPN4-210ENST00000485247 WDR4P57081 412 aaKnown RBP7.73□□□□□ -1.17
PTPN4-210ENST00000485247 MAP4K5Q9Y4K4 846 aa7.73□□□□□ -1.17
PTPN4-210ENST00000485247 ZC3H4Q9UPT8 1303 aaKnown RBP7.73□□□□□ -1.17
PTPN4-210ENST00000485247 DOT1LQ8TEK3 1739 aa7.72□□□□□ -1.17
PTPN4-210ENST00000485247 NR5A1Q13285 461 aa7.72□□□□□ -1.17
PTPN4-210ENST00000485247 ITPKCQ96DU7 683 aa7.72□□□□□ -1.17
PTPN4-210ENST00000485247 LTV1Q96GA3 475 aaPredicted RBP7.72□□□□□ -1.17
PTPN4-210ENST00000485247 ARHGAP9Q9BRR9 750 aa7.72□□□□□ -1.17
PTPN4-210ENST00000485247 ZFAND3Q9H8U3 227 aa7.72□□□□□ -1.17
PTPN4-210ENST00000485247 PXDNLA1KZ92 1463 aa7.72□□□□□ -1.17
PTPN4-210ENST00000485247 QRICH2Q9H0J4 1663 aa7.72□□□□□ -1.17
PTPN4-210ENST00000485247 PLEKHG2Q9H7P9 1386 aa7.71□□□□□ -1.17
PTPN4-210ENST00000485247 C5P01031 1676 aa7.71□□□□□ -1.18
PTPN4-210ENST00000485247 FOXN1O15353 648 aa7.71□□□□□ -1.18
PTPN4-210ENST00000485247 TGFB2P61812 414 aa7.71□□□□□ -1.18
PTPN4-210ENST00000485247 NBPF1Q3BBV0 1214 aa7.71□□□□□ -1.18
PTPN4-210ENST00000485247 TMEM259Q4ZIN3 620 aa7.71□□□□□ -1.18
PTPN4-210ENST00000485247 VASH1Q7L8A9 365 aaPredicted RBP7.71□□□□□ -1.18
PTPN4-210ENST00000485247 SENP2Q9HC62 589 aa7.71□□□□□ -1.18
PTPN4-210ENST00000485247 RNF181Q9P0P0 153 aa7.71□□□□□ -1.18
PTPN4-210ENST00000485247 TTC21AQ8NDW8 1320 aa7.71□□□□□ -1.18
PTPN4-210ENST00000485247 CENPJQ9HC77 1338 aaPredicted RBP7.71□□□□□ -1.18
PTPN4-210ENST00000485247 USP54Q70EL1 1684 aa7.7□□□□□ -1.18
PTPN4-210ENST00000485247 ZIC2O95409 532 aaPredicted RBP7.7□□□□□ -1.18
PTPN4-210ENST00000485247 MMP10P09238 476 aa7.7□□□□□ -1.18
PTPN4-210ENST00000485247 DPEP1P16444 411 aa7.7□□□□□ -1.18
PTPN4-210ENST00000485247 HMGB2P26583 209 aaKnown RBP7.7□□□□□ -1.18
PTPN4-210ENST00000485247 MLLT1Q03111 559 aaPredicted RBP7.7□□□□□ -1.18
PTPN4-210ENST00000485247 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.7□□□□□ -1.18
PTPN4-210ENST00000485247 ZCRB1Q8TBF4 217 aaKnown RBP7.7□□□□□ -1.18
PTPN4-210ENST00000485247 MKRN1Q9UHC7 482 aaKnown RBP7.7□□□□□ -1.18
PTPN4-210ENST00000485247 PALLDQ8WX93 1383 aa7.7□□□□□ -1.18
PTPN4-210ENST00000485247 C10orf71Q711Q0 1435 aa7.69□□□□□ -1.18
PTPN4-210ENST00000485247 N4BP2Q86UW6 1770 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-210ENST00000485247 LCE2AQ5TA79 106 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-210ENST00000485247 KIFC2Q96AC6 838 aa7.69□□□□□ -1.18
PTPN4-210ENST00000485247 ABHD8Q96I13 439 aa7.69□□□□□ -1.18
PTPN4-210ENST00000485247 PRDM10Q9NQV6 1147 aa7.69□□□□□ -1.18
PTPN4-210ENST00000485247 PTK2Q05397 1052 aa7.68□□□□□ -1.18
PTPN4-210ENST00000485247 MRPL14Q6P1L8 145 aaKnown RBP7.68□□□□□ -1.18
PTPN4-210ENST00000485247 MPRIPQ6WCQ1 1025 aa7.68□□□□□ -1.18
PTPN4-210ENST00000485247 NME9Q86XW9 330 aa7.68□□□□□ -1.18
PTPN4-210ENST00000485247 ADAM32Q8TC27 787 aa7.68□□□□□ -1.18
PTPN4-210ENST00000485247 ZFP42Q96MM3 310 aa7.68□□□□□ -1.18
PTPN4-210ENST00000485247 GPSM3Q9Y4H4 160 aa7.68□□□□□ -1.18
PTPN4-210ENST00000485247 C4BP0C0L5 1744 aa7.68□□□□□ -1.18
PTPN4-210ENST00000485247 KTN1Q86UP2 1357 aaKnown RBP7.68□□□□□ -1.18
PTPN4-210ENST00000485247 TOGARAM1Q9Y4F4 1720 aa7.67□□□□□ -1.18
PTPN4-210ENST00000485247 LTN1O94822 1766 aa7.67□□□□□ -1.18
PTPN4-210ENST00000485247 VEGFAP15692 232 aaPredicted RBP7.67□□□□□ -1.18
PTPN4-210ENST00000485247 SSFA2P28290 1259 aa7.67□□□□□ -1.18
PTPN4-210ENST00000485247 CTCFP49711 727 aaPredicted RBP7.67□□□□□ -1.18
PTPN4-210ENST00000485247 LBX1P52954 281 aa7.67□□□□□ -1.18
PTPN4-210ENST00000485247 ZBTB33Q86T24 672 aa7.67□□□□□ -1.18
PTPN4-210ENST00000485247 AIDAQ96BJ3 306 aa7.67□□□□□ -1.18
PTPN4-210ENST00000485247 SLC10A4Q96EP9 437 aa7.67□□□□□ -1.18
PTPN4-210ENST00000485247 EVC2Q86UK5 1308 aa7.67□□□□□ -1.18
PTPN4-210ENST00000485247 TNRC6CQ9HCJ0 1690 aaKnown RBP7.67□□□□□ -1.18
PTPN4-210ENST00000485247 PKD1L3Q7Z443 1732 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 KIAA1551Q9HCM1 1747 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 TAF1LQ8IZX4 1826 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 CCDC85CA6NKD9 419 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 GPR37L1O60883 481 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 KCNA3P22001 575 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 CCDC116Q8IYX3 515 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 MTMR14Q8NCE2 650 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 LINC00116Q8NCU8 138 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 IP6K1Q92551 441 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 PURBQ96QR8 312 aaKnown RBP7.66□□□□□ -1.18
PTPN4-210ENST00000485247 USP31Q70CQ4 1352 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 NSD3Q9BZ95 1437 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 UBR3Q6ZT12 1888 aa7.66□□□□□ -1.18
PTPN4-210ENST00000485247 MEGF6O75095 1541 aa7.65□□□□□ -1.18
PTPN4-210ENST00000485247 NFX1Q12986 1120 aaKnown RBP7.65□□□□□ -1.18
PTPN4-210ENST00000485247 LCE2CQ5TA81 110 aa7.65□□□□□ -1.18
PTPN4-210ENST00000485247 TREML4Q6UXN2 200 aa7.65□□□□□ -1.18
PTPN4-210ENST00000485247 MEIOBQ8N635 442 aa7.65□□□□□ -1.18
PTPN4-210ENST00000485247 DCAF5Q96JK2 942 aa7.65□□□□□ -1.18
PTPN4-210ENST00000485247 KCTD15Q96SI1 283 aaPredicted RBP7.65□□□□□ -1.18
PTPN4-210ENST00000485247 KIF13BQ9NQT8 1826 aa7.65□□□□□ -1.18
PTPN4-210ENST00000485247 CCDC87Q9NVE4 849 aa7.65□□□□□ -1.18
PTPN4-210ENST00000485247 PIM2Q9P1W9 311 aa7.65□□□□□ -1.18
PTPN4-210ENST00000485247 KIAA1210Q9ULL0 1709 aa7.64□□□□□ -1.19
PTPN4-210ENST00000485247 GLTPD2A6NH11 291 aa7.64□□□□□ -1.19
PTPN4-210ENST00000485247 RGS19P49795 217 aa7.64□□□□□ -1.19
PTPN4-210ENST00000485247 TMF1P82094 1093 aa7.64□□□□□ -1.19
PTPN4-210ENST00000485247 DALRD3Q5D0E6 543 aaKnown RBP7.64□□□□□ -1.19
PTPN4-210ENST00000485247 INTS6LQ5JSJ4 861 aaKnown RBP7.64□□□□□ -1.19
PTPN4-210ENST00000485247 PPP1R26Q5T8A7 1209 aaPredicted RBP7.64□□□□□ -1.19
PTPN4-210ENST00000485247 NLGN1Q8N2Q7 840 aa7.64□□□□□ -1.19
PTPN4-210ENST00000485247 PNMA1Q8ND90 353 aa7.64□□□□□ -1.19
PTPN4-210ENST00000485247 BANK1Q8NDB2 785 aa7.64□□□□□ -1.19
PTPN4-210ENST00000485247 SMARCC1Q92922 1105 aaPredicted RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms