RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	GPSM2	P81274	684 aa		12.92	□□□□□ -0.34
HDAC6-222	ENST00000478095	TMC4	Q7Z404	712 aa		12.92	□□□□□ -0.34
HDAC6-222	ENST00000478095	FTSJ3	Q8IY81	847 aa	Known RBP	12.92	□□□□□ -0.34
HDAC6-222	ENST00000478095	MPND	Q8N594	471 aa		12.92	□□□□□ -0.34
HDAC6-222	ENST00000478095	TMEM57	Q8N5G2	664 aa		12.92	□□□□□ -0.34
HDAC6-222	ENST00000478095	MEIS3	Q99687	375 aa		12.92	□□□□□ -0.34
HDAC6-222	ENST00000478095	BICC1	Q9H694	974 aa	Known RBP	12.92	□□□□□ -0.34
HDAC6-222	ENST00000478095	NSFL1C	Q9UNZ2	370 aa	Known RBP	12.92	□□□□□ -0.34
HDAC6-222	ENST00000478095	RTL9	Q8NET4	1388 aa		12.92	□□□□□ -0.34
HDAC6-222	ENST00000478095	ANKRD18B	A2A2Z9	1011 aa		12.91	□□□□□ -0.34
HDAC6-222	ENST00000478095	PLIN1	O60240	522 aa		12.91	□□□□□ -0.34
HDAC6-222	ENST00000478095	IFIT5	Q13325	482 aa	Known RBP	12.91	□□□□□ -0.34
HDAC6-222	ENST00000478095	DZIP1L	Q8IYY4	767 aa	Known RBP	12.91	□□□□□ -0.34
HDAC6-222	ENST00000478095	ANKRD44	Q8N8A2	993 aa		12.91	□□□□□ -0.34
HDAC6-222	ENST00000478095	PSMD1	Q99460	953 aa		12.91	□□□□□ -0.34
HDAC6-222	ENST00000478095	CACNA1S	Q13698	1873 aa		12.91	□□□□□ -0.34
HDAC6-222	ENST00000478095	IGHMBP2	P38935	993 aa	Known RBP	12.9	□□□□□ -0.34
HDAC6-222	ENST00000478095	IARS	P41252	1262 aa	Known RBP	12.9	□□□□□ -0.34
HDAC6-222	ENST00000478095	CCDC57	Q2TAC2	916 aa		12.9	□□□□□ -0.34
HDAC6-222	ENST00000478095	ZNF784	Q8NCA9	323 aa	Predicted RBP	12.9	□□□□□ -0.34
HDAC6-222	ENST00000478095	ZNF594	Q96JF6	807 aa	Predicted RBP	12.9	□□□□□ -0.34
HDAC6-222	ENST00000478095	GPR101	Q96P66	508 aa	Predicted RBP	12.9	□□□□□ -0.34
HDAC6-222	ENST00000478095	PPIP5K2	O43314	1243 aa		12.89	□□□□□ -0.35
HDAC6-222	ENST00000478095	AOC3	Q16853	763 aa		12.89	□□□□□ -0.35
HDAC6-222	ENST00000478095	RABL6	Q3YEC7	729 aa	Predicted RBP	12.89	□□□□□ -0.35
HDAC6-222	ENST00000478095	GRIPAP1	Q4V328	841 aa		12.89	□□□□□ -0.35
HDAC6-222	ENST00000478095	TAF7L	Q5H9L4	462 aa		12.89	□□□□□ -0.35
HDAC6-222	ENST00000478095	ITPRIP	Q8IWB1	547 aa		12.89	□□□□□ -0.35
HDAC6-222	ENST00000478095	PANK1	Q8TE04	598 aa		12.89	□□□□□ -0.35
HDAC6-222	ENST00000478095	MPHOSPH8	Q99549	860 aa		12.89	□□□□□ -0.35
HDAC6-222	ENST00000478095	BSDC1	Q9NW68	430 aa	Predicted RBP	12.89	□□□□□ -0.35
HDAC6-222	ENST00000478095	ANKIB1	Q9P2G1	1089 aa		12.89	□□□□□ -0.35
HDAC6-222	ENST00000478095	LRRFIP2	Q9Y608	721 aa	Known RBP	12.89	□□□□□ -0.35
HDAC6-222	ENST00000478095	C6orf229	H3BNL8	230 aa		12.88	□□□□□ -0.35
HDAC6-222	ENST00000478095	UFL1	O94874	794 aa		12.88	□□□□□ -0.35
HDAC6-222	ENST00000478095	LARGE2	Q8N3Y3	721 aa		12.88	□□□□□ -0.35
HDAC6-222	ENST00000478095	SUPT20H	Q8NEM7	779 aa		12.88	□□□□□ -0.35
HDAC6-222	ENST00000478095	RTFDC1	Q9BY42	306 aa	Predicted RBP	12.88	□□□□□ -0.35
HDAC6-222	ENST00000478095	POLL	Q9UGP5	575 aa		12.88	□□□□□ -0.35
HDAC6-222	ENST00000478095	MINPP1	Q9UNW1	487 aa		12.88	□□□□□ -0.35
HDAC6-222	ENST00000478095	DUOX1	Q9NRD9	1551 aa		12.87	□□□□□ -0.35
HDAC6-222	ENST00000478095	WTIP	A6NIX2	430 aa	Predicted RBP	12.87	□□□□□ -0.35
HDAC6-222	ENST00000478095	RIMBP2	O15034	1052 aa		12.87	□□□□□ -0.35
HDAC6-222	ENST00000478095	GNAI3	P08754	354 aa		12.87	□□□□□ -0.35
HDAC6-222	ENST00000478095	KLHDC4	Q8TBB5	520 aa		12.87	□□□□□ -0.35
HDAC6-222	ENST00000478095	TBC1D16	Q8TBP0	767 aa		12.87	□□□□□ -0.35
HDAC6-222	ENST00000478095	GGA1	Q9UJY5	639 aa		12.87	□□□□□ -0.35
HDAC6-222	ENST00000478095	TAF1	P21675	1872 aa		12.87	□□□□□ -0.35
HDAC6-222	ENST00000478095	XDH	P47989	1333 aa		12.87	□□□□□ -0.35
HDAC6-222	ENST00000478095	ZNF541	Q9H0D2	1346 aa		12.87	□□□□□ -0.35
HDAC6-222	ENST00000478095	COL4A5	P29400	1685 aa		12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	C19orf67	A6NJJ6	358 aa		12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	KIAA2012	Q0VF49	1180 aa		12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	WASHC4	Q2M389	1173 aa		12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	LDHAL6A	Q6ZMR3	332 aa		12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	NIM1K	Q8IY84	436 aa		12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	HELB	Q8NG08	1087 aa	Predicted RBP	12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	JDP2	Q8WYK2	163 aa		12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	PUS3	Q9BZE2	481 aa	Known RBP	12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	GPBP1L1	Q9HC44	474 aa	Predicted RBP	12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	PODXL2	Q9NZ53	605 aa		12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	ZC3H4	Q9UPT8	1303 aa	Known RBP	12.86	□□□□□ -0.35
HDAC6-222	ENST00000478095	FER1L6	Q2WGJ9	1857 aa		12.85	□□□□□ -0.35
HDAC6-222	ENST00000478095	CHRND	Q07001	517 aa		12.85	□□□□□ -0.35
HDAC6-222	ENST00000478095	C20orf194	Q5TEA3	1177 aa		12.85	□□□□□ -0.35
HDAC6-222	ENST00000478095	C1orf115	Q9H7X2	142 aa		12.85	□□□□□ -0.35
HDAC6-222	ENST00000478095	CNNM1	Q9NRU3	951 aa		12.85	□□□□□ -0.35
HDAC6-222	ENST00000478095	COG6	Q9Y2V7	657 aa		12.85	□□□□□ -0.35
HDAC6-222	ENST00000478095	LRRC37A	A6NMS7	1700 aa		12.85	□□□□□ -0.35
HDAC6-222	ENST00000478095	SNAP23	O00161	211 aa		12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	TAF5L	O75529	589 aa		12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	DDN	O94850	711 aa	Predicted RBP	12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	GNAI2	P04899	355 aa		12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	ATP2B4	P23634	1241 aa		12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	DOK7	Q18PE1	504 aa		12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	LRRC24	Q50LG9	513 aa		12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	EYA3	Q99504	573 aa		12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	DBNDD1	Q9H9R9	158 aa		12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	NMRK2	Q9NPI5	230 aa		12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	HDAC5	Q9UQL6	1122 aa		12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	CHD4	Q14839	1912 aa		12.84	□□□□□ -0.35
HDAC6-222	ENST00000478095	GLTPD2	A6NH11	291 aa		12.83	□□□□□ -0.36
HDAC6-222	ENST00000478095	FZD9	O00144	591 aa		12.83	□□□□□ -0.36
HDAC6-222	ENST00000478095	ZBTB7B	O15156	539 aa	Predicted RBP	12.83	□□□□□ -0.36
HDAC6-222	ENST00000478095	MS4A1	P11836	297 aa		12.83	□□□□□ -0.36
HDAC6-222	ENST00000478095	KLRK1	P26718	216 aa		12.83	□□□□□ -0.36
HDAC6-222	ENST00000478095	KCNJ4	P48050	445 aa		12.83	□□□□□ -0.36
HDAC6-222	ENST00000478095	RFX5	P48382	616 aa	Predicted RBP	12.83	□□□□□ -0.36
HDAC6-222	ENST00000478095	ZC3H12C	Q9C0D7	883 aa	Known RBP	12.83	□□□□□ -0.36
HDAC6-222	ENST00000478095	ANKRD2	Q9GZV1	360 aa		12.83	□□□□□ -0.36
HDAC6-222	ENST00000478095	VPS33B	Q9H267	617 aa		12.83	□□□□□ -0.36
HDAC6-222	ENST00000478095	KDM2B	Q8NHM5	1336 aa		12.83	□□□□□ -0.36
HDAC6-222	ENST00000478095	SRGAP3	O43295	1099 aa		12.82	□□□□□ -0.36
HDAC6-222	ENST00000478095	CD44	P16070	742 aa	Known RBP	12.82	□□□□□ -0.36
HDAC6-222	ENST00000478095	EIF6	P56537	245 aa	Known RBP	12.82	□□□□□ -0.36
HDAC6-222	ENST00000478095	PTPN12	Q05209	780 aa	Known RBP	12.82	□□□□□ -0.36
HDAC6-222	ENST00000478095	MVP	Q14764	893 aa	Known RBP	12.82	□□□□□ -0.36
HDAC6-222	ENST00000478095	DPY19L2	Q6NUT2	758 aa		12.82	□□□□□ -0.36
HDAC6-222	ENST00000478095	SIL1	Q9H173	461 aa		12.82	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms