RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 ZNF594Q96JF6 807 aaPredicted RBP35.07■■■■□ 3.2
SMARCC1-203ENST00000454240 VPS33BQ9H267 617 aa35.07■■■■□ 3.2
SMARCC1-203ENST00000454240 ZBTB7BO15156 539 aaPredicted RBP35.06■■■■□ 3.2
SMARCC1-203ENST00000454240 ZC3H4Q9UPT8 1303 aaKnown RBP35.06■■■■□ 3.2
SMARCC1-203ENST00000454240 POLLQ9UGP5 575 aa35.05■■■■□ 3.2
SMARCC1-203ENST00000454240 TAF7LQ5H9L4 462 aa35.04■■■■□ 3.2
SMARCC1-203ENST00000454240 ANKIB1Q9P2G1 1089 aa35.04■■■■□ 3.2
SMARCC1-203ENST00000454240 A0A1B0GUL6 1792 aa35.03■■■■□ 3.2
SMARCC1-203ENST00000454240 GNAI2P04899 355 aa35.03■■■■□ 3.2
SMARCC1-203ENST00000454240 PDE3AQ14432 1141 aa35.03■■■■□ 3.2
SMARCC1-203ENST00000454240 TBC1D16Q8TBP0 767 aa35.03■■■■□ 3.2
SMARCC1-203ENST00000454240 XDHP47989 1333 aa35.03■■■■□ 3.2
SMARCC1-203ENST00000454240 LDHAL6AQ6ZMR3 332 aa35.02■■■■□ 3.2
SMARCC1-203ENST00000454240 RFX5P48382 616 aaPredicted RBP35.01■■■■□ 3.2
SMARCC1-203ENST00000454240 COL4A5P29400 1685 aa35.01■■■■□ 3.19
SMARCC1-203ENST00000454240 MVPQ14764 893 aaKnown RBP35■■■■□ 3.19
SMARCC1-203ENST00000454240 AOC3Q16853 763 aa35■■■■□ 3.19
SMARCC1-203ENST00000454240 GGA1Q9UJY5 639 aa35■■■■□ 3.19
SMARCC1-203ENST00000454240 C6orf229H3BNL8 230 aa34.99■■■■□ 3.19
SMARCC1-203ENST00000454240 PPIP5K2O43314 1243 aa34.99■■■■□ 3.19
SMARCC1-203ENST00000454240 KIAA2012Q0VF49 1180 aa34.99■■■■□ 3.19
SMARCC1-203ENST00000454240 C20orf194Q5TEA3 1177 aa34.99■■■■□ 3.19
SMARCC1-203ENST00000454240 LARGE2Q8N3Y3 721 aa34.99■■■■□ 3.19
SMARCC1-203ENST00000454240 ANKRD2Q9GZV1 360 aa34.99■■■■□ 3.19
SMARCC1-203ENST00000454240 COG6Q9Y2V7 657 aa34.99■■■■□ 3.19
SMARCC1-203ENST00000454240 ATP2B4P23634 1241 aa34.98■■■■□ 3.19
SMARCC1-203ENST00000454240 CHRNDQ07001 517 aa34.98■■■■□ 3.19
SMARCC1-203ENST00000454240 MTX1Q13505 466 aa34.98■■■■□ 3.19
SMARCC1-203ENST00000454240 CNNM1Q9NRU3 951 aa34.98■■■■□ 3.19
SMARCC1-203ENST00000454240 UFL1O94874 794 aa34.97■■■■□ 3.19
SMARCC1-203ENST00000454240 PUS3Q9BZE2 481 aaKnown RBP34.97■■■■□ 3.19
SMARCC1-203ENST00000454240 PTPN12Q05209 780 aaKnown RBP34.96■■■■□ 3.19
SMARCC1-203ENST00000454240 WASHC4Q2M389 1173 aa34.96■■■■□ 3.19
SMARCC1-203ENST00000454240 KLHDC4Q8TBB5 520 aa34.96■■■■□ 3.19
SMARCC1-203ENST00000454240 JDP2Q8WYK2 163 aa34.96■■■■□ 3.19
SMARCC1-203ENST00000454240 EYA3Q99504 573 aa34.96■■■■□ 3.19
SMARCC1-203ENST00000454240 RIPOR2Q9Y4F9 1068 aa34.96■■■■□ 3.19
SMARCC1-203ENST00000454240 ZNF784Q8NCA9 323 aaPredicted RBP34.95■■■■□ 3.19
SMARCC1-203ENST00000454240 DDX19BQ9UMR2 479 aa34.95■■■■□ 3.19
SMARCC1-203ENST00000454240 LEMD3Q9Y2U8 911 aa34.95■■■■□ 3.19
SMARCC1-203ENST00000454240 WTIPA6NIX2 430 aaPredicted RBP34.94■■■■□ 3.18
SMARCC1-203ENST00000454240 FZD9O00144 591 aa34.94■■■■□ 3.18
SMARCC1-203ENST00000454240 RRP1P56182 461 aaKnown RBP34.94■■■■□ 3.18
SMARCC1-203ENST00000454240 GPR101Q96P66 508 aaPredicted RBP34.94■■■■□ 3.18
SMARCC1-203ENST00000454240 LRRC24Q50LG9 513 aa34.92■■■■□ 3.18
SMARCC1-203ENST00000454240 NIM1KQ8IY84 436 aa34.92■■■■□ 3.18
SMARCC1-203ENST00000454240 RIMBP2O15034 1052 aa34.91■■■■□ 3.18
SMARCC1-203ENST00000454240 SRGAP3O43295 1099 aa34.91■■■■□ 3.18
SMARCC1-203ENST00000454240 HELBQ8NG08 1087 aaPredicted RBP34.91■■■■□ 3.18
SMARCC1-203ENST00000454240 ZC3H12CQ9C0D7 883 aaKnown RBP34.91■■■■□ 3.18
SMARCC1-203ENST00000454240 C1orf115Q9H7X2 142 aa34.91■■■■□ 3.18
SMARCC1-203ENST00000454240 GLTPD2A6NH11 291 aa34.9■■■■□ 3.18
SMARCC1-203ENST00000454240 TAF5LO75529 589 aa34.9■■■■□ 3.18
SMARCC1-203ENST00000454240 ZNF804BA4D1E1 1349 aa34.89■■■■□ 3.18
SMARCC1-203ENST00000454240 MROH5Q6ZUA9 1318 aa34.89■■■■□ 3.18
SMARCC1-203ENST00000454240 DPY19L2Q6NUT2 758 aa34.89■■■■□ 3.18
SMARCC1-203ENST00000454240 COPRSQ9NQ92 184 aa34.89■■■■□ 3.18
SMARCC1-203ENST00000454240 FBXO3Q9UK99 471 aa34.89■■■■□ 3.18
SMARCC1-203ENST00000454240 PNMA6EA0A0J9YXQ4 647 aa34.88■■■■□ 3.17
SMARCC1-203ENST00000454240 EYA2O00167 538 aa34.88■■■■□ 3.17
SMARCC1-203ENST00000454240 ZBTB40Q9NUA8 1239 aa34.88■■■■□ 3.17
SMARCC1-203ENST00000454240 ZNRF3Q9ULT6 936 aa34.88■■■■□ 3.17
SMARCC1-203ENST00000454240 MED23Q9ULK4 1368 aa34.87■■■■□ 3.17
SMARCC1-203ENST00000454240 ATP8B2P98198 1209 aa34.87■■■■□ 3.17
SMARCC1-203ENST00000454240 ZNF526Q8TF50 670 aaPredicted RBP34.87■■■■□ 3.17
SMARCC1-203ENST00000454240 CHMP4BQ9H444 224 aaKnown RBP34.87■■■■□ 3.17
SMARCC1-203ENST00000454240 KDM2BQ8NHM5 1336 aa34.86■■■■□ 3.17
SMARCC1-203ENST00000454240 ZNF541Q9H0D2 1346 aa34.86■■■■□ 3.17
SMARCC1-203ENST00000454240 PA2G4Q9UQ80 394 aaKnown RBP34.86■■■■□ 3.17
SMARCC1-203ENST00000454240 SNAP23O00161 211 aa34.85■■■■□ 3.17
SMARCC1-203ENST00000454240 CIAO1O76071 339 aa34.85■■■■□ 3.17
SMARCC1-203ENST00000454240 ATG9AQ7Z3C6 839 aa34.85■■■■□ 3.17
SMARCC1-203ENST00000454240 KCNJ4P48050 445 aa34.84■■■■□ 3.17
SMARCC1-203ENST00000454240 EIF6P56537 245 aaKnown RBP34.84■■■■□ 3.17
SMARCC1-203ENST00000454240 VGLL2Q8N8G2 317 aa34.84■■■■□ 3.17
SMARCC1-203ENST00000454240 DBNDD1Q9H9R9 158 aa34.84■■■■□ 3.17
SMARCC1-203ENST00000454240 GPBP1L1Q9HC44 474 aaPredicted RBP34.84■■■■□ 3.17
SMARCC1-203ENST00000454240 IRS2Q9Y4H2 1338 aa34.83■■■■□ 3.17
SMARCC1-203ENST00000454240 YDJCA8MPS7 323 aa34.83■■■■□ 3.17
SMARCC1-203ENST00000454240 DDNO94850 711 aaPredicted RBP34.83■■■■□ 3.17
SMARCC1-203ENST00000454240 POLA2Q14181 598 aa34.83■■■■□ 3.17
SMARCC1-203ENST00000454240 DOK7Q18PE1 504 aa34.83■■■■□ 3.17
SMARCC1-203ENST00000454240 METTL24Q5JXM2 366 aa34.83■■■■□ 3.17
SMARCC1-203ENST00000454240 C15orf52Q6ZUT6 534 aaKnown RBP34.83■■■■□ 3.17
SMARCC1-203ENST00000454240 TXNRD3Q86VQ6 643 aa34.83■■■■□ 3.17
SMARCC1-203ENST00000454240 SSH3Q8TE77 659 aa34.83■■■■□ 3.17
SMARCC1-203ENST00000454240 SIL1Q9H173 461 aa34.83■■■■□ 3.17
SMARCC1-203ENST00000454240 WDR90Q96KV7 1748 aa34.82■■■■□ 3.16
SMARCC1-203ENST00000454240 ECE2O60344 883 aa34.81■■■■□ 3.16
SMARCC1-203ENST00000454240 PDE8BO95263 885 aa34.81■■■■□ 3.16
SMARCC1-203ENST00000454240 KLRK1P26718 216 aa34.81■■■■□ 3.16
SMARCC1-203ENST00000454240 UBE4AQ14139 1066 aa34.81■■■■□ 3.16
SMARCC1-203ENST00000454240 CEP85Q6P2H3 762 aa34.81■■■■□ 3.16
SMARCC1-203ENST00000454240 SCN9AQ15858 1988 aa34.81■■■■□ 3.16
SMARCC1-203ENST00000454240 CXCL9Q07325 125 aa34.8■■■■□ 3.16
SMARCC1-203ENST00000454240 GPC2Q8N158 579 aa34.8■■■■□ 3.16
SMARCC1-203ENST00000454240 IL15P40933 162 aaPredicted RBP34.79■■■■□ 3.16
SMARCC1-203ENST00000454240 PSME4Q14997 1843 aa34.78■■■■□ 3.16
SMARCC1-203ENST00000454240 G3V3G9 751 aa34.78■■■■□ 3.16
SMARCC1-203ENST00000454240 DCAF8Q5TAQ9 597 aa34.78■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 449.5 ms