RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CELF2O95319 508 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 TBC1D10BQ4KMP7 808 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 HS1BP3Q53T59 392 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 KIAA0232Q92628 1395 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 MASTLQ96GX5 879 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 ZNF396Q96N95 335 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 SCAF11Q99590 1463 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 USP40Q9NVE5 1235 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 DUOX2Q9NRD8 1548 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 NPR1P16066 1061 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 BRPF1P55201 1214 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 PNMA8AQ86V59 439 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 IFT57Q9NWB7 429 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 ZHX1Q9UKY1 873 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 LMBR1LQ6UX01 489 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 KCNG4Q8TDN1 519 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 CYP46A1Q9Y6A2 500 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 CWC27Q6UX04 472 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 MLXIPQ9HAP2 919 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 CEP83Q9Y592 693 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 PDE8AO60658 829 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 SCNN1DP51172 638 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 ANKRD62A6NC57 917 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 KBTBD13C9JR72 458 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 TMPOP42166 694 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 DBNDD1Q9H9R9 158 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 ZFYVE28Q9HCC9 887 aa10.67□□□□□ -0.7
LIMCH1-202ENST00000381753 ANKRD1Q15327 319 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 KIAA1841Q6NSI8 718 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 TNS4Q8IZW8 715 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 LRRC45Q96CN5 670 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 ERVV-2B6SEH9 535 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 FAM89AQ96GI7 184 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 CARD10Q9BWT7 1032 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 SYNCQ9H7C4 482 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 RRAGCQ9HB90 399 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 TBCAO75347 108 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 KCNJ6P48051 423 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 GRIPAP1Q4V328 841 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 CEP131Q9UPN4 1083 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 PIK3R4Q99570 1358 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 TLR3O15455 904 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 CRKLP46109 303 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 FILIP1LQ4L180 1135 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 SMC1BQ8NDV3 1235 aa10.66□□□□□ -0.7
LIMCH1-202ENST00000381753 F6X3S4 739 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 MFSD14BQ5SR56 506 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 CDC45O75419 566 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 SMC2O95347 1197 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 FBLN1P23142 703 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 FLIIQ13045 1269 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 KRT32Q14532 448 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 C1orf228Q6PIY5 440 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 TMC4Q7Z404 712 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 EPB41L2O43491 1005 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 CEBPZQ03701 1054 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 CETN1Q12798 172 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 CEP57L1Q8IYX8 460 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 PANK1Q8TE04 598 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 GOLGA8AA7E2F4 631 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 GOLGA8BA8MQT2 603 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 RAB11FIP3O75154 756 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 RPS8P62241 208 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 PDE4DQ08499 809 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 Q3C1V9 767 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 CDC37L1Q7L3B6 337 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 GLG1Q92896 1179 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 TSG101Q99816 390 aa10.65□□□□□ -0.7
LIMCH1-202ENST00000381753 CETN2P41208 172 aa10.65□□□□□ -0.71
LIMCH1-202ENST00000381753 CBX1P83916 185 aa10.65□□□□□ -0.71
LIMCH1-202ENST00000381753 MIGA1Q8NAN2 632 aa10.65□□□□□ -0.71
LIMCH1-202ENST00000381753 TAF1CQ15572 869 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 HEATR3Q7Z4Q2 680 aa10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 IFIT1BQ5T764 474 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 RBM19Q9Y4C8 960 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 HSP90AA2PQ14568 343 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 BLOC1S2Q6QNY1 142 aa10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 SASS6Q6UVJ0 657 aa10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 ANO3Q9BYT9 981 aa10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 TNPO2O14787 897 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 A1BGP04217 495 aa10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 TMEM67Q5HYA8 995 aa10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 C9orf131Q5VYM1 1079 aa10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 KIFC2Q96AC6 838 aa10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 IMPG2Q9BZV3 1241 aa10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 TRPC6Q9Y210 931 aa10.64□□□□□ -0.71
LIMCH1-202ENST00000381753 A0A0G2JLW4 131 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 GTPBP6O43824 516 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 RNASELQ05823 741 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 MAP3K11Q16584 847 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 NBPF15Q8N660 670 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 SSRP1Q08945 709 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 CALML4Q96GE6 196 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 FERMT1Q9BQL6 677 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 MTFR1LQ9H019 292 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 ITGA6P23229 1130 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 USP37Q86T82 979 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 CERS3Q8IU89 383 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 RRP36Q96EU6 259 aaKnown RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms