RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 SNRKQ9NRH2 765 aa21.72■■□□□ 1.07
CCDC3-201ENST00000378825 DDX17Q92841 729 aaKnown RBP21.71■■□□□ 1.07
CCDC3-201ENST00000378825 ALDH1L1O75891 902 aa21.71■■□□□ 1.07
CCDC3-201ENST00000378825 CCAR1Q8IX12 1150 aaKnown RBP21.71■■□□□ 1.07
CCDC3-201ENST00000378825 KIF18AQ8NI77 898 aa21.71■■□□□ 1.07
CCDC3-201ENST00000378825 NEK1Q96PY6 1258 aa21.71■■□□□ 1.07
CCDC3-201ENST00000378825 ST7Q9NRC1 585 aa21.71■■□□□ 1.07
CCDC3-201ENST00000378825 CCDC69A6NI79 296 aa21.71■■□□□ 1.07
CCDC3-201ENST00000378825 IGKV5-2P06315 115 aa21.71■■□□□ 1.07
CCDC3-201ENST00000378825 CYP21A2P08686 494 aa21.71■■□□□ 1.07
CCDC3-201ENST00000378825 HOXB7P09629 217 aa21.71■■□□□ 1.07
CCDC3-201ENST00000378825 PAXBP1Q9Y5B6 917 aa21.71■■□□□ 1.07
CCDC3-201ENST00000378825 STOX1Q6ZVD7 989 aa21.7■■□□□ 1.06
CCDC3-201ENST00000378825 HIP1O00291 1037 aa21.7■■□□□ 1.06
CCDC3-201ENST00000378825 PIP4K2AP48426 406 aaPredicted RBP21.7■■□□□ 1.06
CCDC3-201ENST00000378825 CCZ1BP86790 482 aa21.7■■□□□ 1.06
CCDC3-201ENST00000378825 CCZ1P86791 482 aaPredicted RBP21.7■■□□□ 1.06
CCDC3-201ENST00000378825 DHX40Q8IX18 779 aaKnown RBP21.7■■□□□ 1.06
CCDC3-201ENST00000378825 USP28Q96RU2 1077 aa21.7■■□□□ 1.06
CCDC3-201ENST00000378825 NCOA5Q9HCD5 579 aaKnown RBP21.7■■□□□ 1.06
CCDC3-201ENST00000378825 CCT2P78371 535 aaKnown RBP21.69■■□□□ 1.06
CCDC3-201ENST00000378825 ELF2Q15723 593 aa21.69■■□□□ 1.06
CCDC3-201ENST00000378825 DNAJC2Q99543 621 aaKnown RBP21.69■■□□□ 1.06
CCDC3-201ENST00000378825 DBNLQ9UJU6 430 aaKnown RBP21.69■■□□□ 1.06
CCDC3-201ENST00000378825 KDM3BQ7LBC6 1761 aa21.69■■□□□ 1.06
CCDC3-201ENST00000378825 USP54Q70EL1 1684 aa21.69■■□□□ 1.06
CCDC3-201ENST00000378825 ERBB3P21860 1342 aa21.69■■□□□ 1.06
CCDC3-201ENST00000378825 SNW1Q13573 536 aaKnown RBP21.69■■□□□ 1.06
CCDC3-201ENST00000378825 KRT28Q7Z3Y7 464 aa21.69■■□□□ 1.06
CCDC3-201ENST00000378825 MED1Q15648 1581 aaPredicted RBP21.68■■□□□ 1.06
CCDC3-201ENST00000378825 NYAP1Q6ZVC0 841 aa21.68■■□□□ 1.06
CCDC3-201ENST00000378825 LRRN4CLQ8ND94 238 aa21.68■■□□□ 1.06
CCDC3-201ENST00000378825 PODXL2Q9NZ53 605 aa21.68■■□□□ 1.06
CCDC3-201ENST00000378825 CGNQ9P2M7 1197 aaKnown RBP21.68■■□□□ 1.06
CCDC3-201ENST00000378825 CTDNEP1O95476 244 aa21.68■■□□□ 1.06
CCDC3-201ENST00000378825 SLC39A6Q13433 755 aa21.68■■□□□ 1.06
CCDC3-201ENST00000378825 PTPN14Q15678 1187 aa21.68■■□□□ 1.06
CCDC3-201ENST00000378825 PROSER2Q86WR7 435 aaPredicted RBP21.68■■□□□ 1.06
CCDC3-201ENST00000378825 LINS1Q8NG48 757 aa21.68■■□□□ 1.06
CCDC3-201ENST00000378825 SLFN14P0C7P3 912 aa21.67■■□□□ 1.06
CCDC3-201ENST00000378825 FBXO38Q6PIJ6 1188 aa21.67■■□□□ 1.06
CCDC3-201ENST00000378825 AOPEPQ8N6M6 819 aa21.67■■□□□ 1.06
CCDC3-201ENST00000378825 ZNF609O15014 1411 aa21.67■■□□□ 1.06
CCDC3-201ENST00000378825 BECN2A8MW95 431 aa21.67■■□□□ 1.06
CCDC3-201ENST00000378825 MYL6BP14649 208 aa21.67■■□□□ 1.06
CCDC3-201ENST00000378825 APOBRQ0VD83 1088 aa21.67■■□□□ 1.06
CCDC3-201ENST00000378825 SYCP1Q15431 976 aa21.67■■□□□ 1.06
CCDC3-201ENST00000378825 AMOTQ4VCS5 1084 aa21.67■■□□□ 1.06
CCDC3-201ENST00000378825 DDX46Q7L014 1031 aaKnown RBP21.67■■□□□ 1.06
CCDC3-201ENST00000378825 CHST3Q7LGC8 479 aa21.67■■□□□ 1.06
CCDC3-201ENST00000378825 NAP1L2Q9ULW6 460 aaPredicted RBP21.67■■□□□ 1.06
CCDC3-201ENST00000378825 FGD1P98174 961 aa21.66■■□□□ 1.06
CCDC3-201ENST00000378825 ALDH8A1Q9H2A2 487 aaPredicted RBP21.66■■□□□ 1.06
CCDC3-201ENST00000378825 CDC25BP30305 580 aa21.66■■□□□ 1.06
CCDC3-201ENST00000378825 RBM6P78332 1123 aaKnown RBP21.66■■□□□ 1.06
CCDC3-201ENST00000378825 USPL1Q5W0Q7 1092 aa21.66■■□□□ 1.06
CCDC3-201ENST00000378825 JCADQ9P266 1359 aa21.65■■□□□ 1.06
CCDC3-201ENST00000378825 STX1AQ16623 288 aa21.65■■□□□ 1.06
CCDC3-201ENST00000378825 TSGA10IPQ3SY00 556 aa21.65■■□□□ 1.06
CCDC3-201ENST00000378825 SARM1Q6SZW1 724 aa21.65■■□□□ 1.06
CCDC3-201ENST00000378825 MRFAP1L1Q96HT8 127 aa21.65■■□□□ 1.06
CCDC3-201ENST00000378825 HMG20BQ9P0W2 317 aa21.65■■□□□ 1.06
CCDC3-201ENST00000378825 NSUN7Q8NE18 718 aaKnown RBP21.65■■□□□ 1.06
CCDC3-201ENST00000378825 MORC2Q9Y6X9 1032 aaPredicted RBP21.65■■□□□ 1.06
CCDC3-201ENST00000378825 TFCP2Q12800 502 aa21.64■■□□□ 1.06
CCDC3-201ENST00000378825 PDIA6Q15084 440 aa21.64■■□□□ 1.05
CCDC3-201ENST00000378825 ILDR1Q86SU0 546 aaPredicted RBP21.64■■□□□ 1.05
CCDC3-201ENST00000378825 NBPF11Q86T75 865 aa21.64■■□□□ 1.05
CCDC3-201ENST00000378825 CCAR2Q8N163 923 aaKnown RBP21.64■■□□□ 1.05
CCDC3-201ENST00000378825 CFAP45Q9UL16 551 aa21.64■■□□□ 1.05
CCDC3-201ENST00000378825 ZBTB22O15209 634 aa21.64■■□□□ 1.05
CCDC3-201ENST00000378825 OTUD7BQ6GQQ9 843 aa21.64■■□□□ 1.05
CCDC3-201ENST00000378825 DBNDD2Q9BQY9 259 aa21.64■■□□□ 1.05
CCDC3-201ENST00000378825 PTPDC1A2A3K4 754 aa21.63■■□□□ 1.05
CCDC3-201ENST00000378825 RIC3Q7Z5B4 369 aa21.63■■□□□ 1.05
CCDC3-201ENST00000378825 FSIP1Q8NA03 581 aa21.63■■□□□ 1.05
CCDC3-201ENST00000378825 NLRP2Q9NX02 1062 aa21.63■■□□□ 1.05
CCDC3-201ENST00000378825 RCOR1Q9UKL0 485 aa21.63■■□□□ 1.05
CCDC3-201ENST00000378825 PDIA4P13667 645 aaKnown RBP21.63■■□□□ 1.05
CCDC3-201ENST00000378825 ME1P48163 572 aa21.63■■□□□ 1.05
CCDC3-201ENST00000378825 ENGASEQ8NFI3 743 aa21.63■■□□□ 1.05
CCDC3-201ENST00000378825 CABLES1Q8TDN4 633 aa21.63■■□□□ 1.05
CCDC3-201ENST00000378825 SMARCC2Q8TAQ2 1214 aa21.62■■□□□ 1.05
CCDC3-201ENST00000378825 ZNF446Q9NWS9 450 aa21.62■■□□□ 1.05
CCDC3-201ENST00000378825 A0A1B0GVL5 298 aa21.62■■□□□ 1.05
CCDC3-201ENST00000378825 ZSCAN16Q9H4T2 348 aaPredicted RBP21.62■■□□□ 1.05
CCDC3-201ENST00000378825 KINO60870 393 aaKnown RBP21.61■■□□□ 1.05
CCDC3-201ENST00000378825 FMNL2Q96PY5 1086 aa21.61■■□□□ 1.05
CCDC3-201ENST00000378825 MYD88Q99836 296 aa21.61■■□□□ 1.05
CCDC3-201ENST00000378825 GPHNQ9NQX3 736 aaPredicted RBP21.61■■□□□ 1.05
CCDC3-201ENST00000378825 CCDC73Q6ZRK6 1079 aa21.61■■□□□ 1.05
CCDC3-201ENST00000378825 ZNF397Q8NF99 534 aaPredicted RBP21.61■■□□□ 1.05
CCDC3-201ENST00000378825 UTYO14607 1347 aa21.61■■□□□ 1.05
CCDC3-201ENST00000378825 BIN1O00499 593 aa21.6■■□□□ 1.05
CCDC3-201ENST00000378825 DPCR1Q3MIW9 517 aa21.6■■□□□ 1.05
CCDC3-201ENST00000378825 NEURL1BA8MQ27 555 aa21.6■■□□□ 1.05
CCDC3-201ENST00000378825 TNNI3KQ59H18 835 aa21.6■■□□□ 1.05
CCDC3-201ENST00000378825 E4F1Q66K89 784 aaPredicted RBP21.6■■□□□ 1.05
CCDC3-201ENST00000378825 GJB4Q9NTQ9 266 aa21.6■■□□□ 1.05
CCDC3-201ENST00000378825 FPGT-TNNI3KV9GXZ4 949 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms