RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 EDC3Q96F86 508 aaKnown RBP24.81■■□□□ 1.56
UPF3A-202ENST00000375299 OVOS2A0A0G2JMS6 1433 aa24.81■■□□□ 1.56
UPF3A-202ENST00000375299 SKILP12757 684 aa24.81■■□□□ 1.56
UPF3A-202ENST00000375299 CEBPZQ03701 1054 aaKnown RBP24.81■■□□□ 1.56
UPF3A-202ENST00000375299 RCOR1Q9UKL0 485 aa24.81■■□□□ 1.56
UPF3A-202ENST00000375299 PRAMEF22A3QJZ6 481 aa24.8■■□□□ 1.56
UPF3A-202ENST00000375299 BECN2A8MW95 431 aa24.8■■□□□ 1.56
UPF3A-202ENST00000375299 SCRN1Q12765 414 aa24.8■■□□□ 1.56
UPF3A-202ENST00000375299 ZNF397Q8NF99 534 aaPredicted RBP24.8■■□□□ 1.56
UPF3A-202ENST00000375299 LLPHQ9BRT6 129 aaKnown RBP24.8■■□□□ 1.56
UPF3A-202ENST00000375299 U3KPZ7 1027 aaPredicted RBP24.8■■□□□ 1.56
UPF3A-202ENST00000375299 PXDNQ92626 1479 aa24.8■■□□□ 1.56
UPF3A-202ENST00000375299 CCDC69A6NI79 296 aa24.8■■□□□ 1.56
UPF3A-202ENST00000375299 CCZ1BP86790 482 aa24.8■■□□□ 1.56
UPF3A-202ENST00000375299 CCZ1P86791 482 aaPredicted RBP24.8■■□□□ 1.56
UPF3A-202ENST00000375299 KLHDC4Q8TBB5 520 aa24.8■■□□□ 1.56
UPF3A-202ENST00000375299 GOLPH3LQ9H4A5 285 aa24.8■■□□□ 1.56
UPF3A-202ENST00000375299 RFX7Q2KHR2 1363 aa24.8■■□□□ 1.56
UPF3A-202ENST00000375299 NAA16Q6N069 864 aaPredicted RBP24.79■■□□□ 1.56
UPF3A-202ENST00000375299 ZNF771Q7L3S4 317 aaPredicted RBP24.79■■□□□ 1.56
UPF3A-202ENST00000375299 LAMA4Q16363 1823 aa24.79■■□□□ 1.56
UPF3A-202ENST00000375299 AMOTQ4VCS5 1084 aa24.79■■□□□ 1.56
UPF3A-202ENST00000375299 CCDC73Q6ZRK6 1079 aa24.79■■□□□ 1.56
UPF3A-202ENST00000375299 DHX40Q8IX18 779 aaKnown RBP24.79■■□□□ 1.56
UPF3A-202ENST00000375299 ZNF215Q9UL58 517 aaPredicted RBP24.79■■□□□ 1.56
UPF3A-202ENST00000375299 USP16Q9Y5T5 823 aa24.79■■□□□ 1.56
UPF3A-202ENST00000375299 ANO10Q9NW15 660 aa24.78■■□□□ 1.56
UPF3A-202ENST00000375299 ZNF609O15014 1411 aa24.78■■□□□ 1.56
UPF3A-202ENST00000375299 CYP21A2P08686 494 aa24.78■■□□□ 1.56
UPF3A-202ENST00000375299 ATP5JP18859 108 aa24.78■■□□□ 1.56
UPF3A-202ENST00000375299 SNW1Q13573 536 aaKnown RBP24.78■■□□□ 1.56
UPF3A-202ENST00000375299 C1orf141Q5JVX7 400 aa24.78■■□□□ 1.56
UPF3A-202ENST00000375299 SIPA1L3O60292 1781 aaPredicted RBP24.77■■□□□ 1.56
UPF3A-202ENST00000375299 PFKFB2O60825 505 aa24.77■■□□□ 1.56
UPF3A-202ENST00000375299 AIMP1Q12904 312 aaKnown RBP24.77■■□□□ 1.56
UPF3A-202ENST00000375299 FILIP1Q7Z7B0 1213 aa24.77■■□□□ 1.56
UPF3A-202ENST00000375299 DDX21Q9NR30 783 aaKnown RBP eCLIP24.77■■□□□ 1.56
UPF3A-202ENST00000375299 KCND1Q9NSA2 647 aa24.77■■□□□ 1.56
UPF3A-202ENST00000375299 KINO60870 393 aaKnown RBP24.76■■□□□ 1.55
UPF3A-202ENST00000375299 GCP02774 474 aa24.76■■□□□ 1.55
UPF3A-202ENST00000375299 IGKV5-2P06315 115 aa24.76■■□□□ 1.55
UPF3A-202ENST00000375299 NSUN7Q8NE18 718 aaKnown RBP24.76■■□□□ 1.55
UPF3A-202ENST00000375299 ARHGEF25Q86VW2 580 aa24.76■■□□□ 1.55
UPF3A-202ENST00000375299 CCAR2Q8N163 923 aaKnown RBP24.76■■□□□ 1.55
UPF3A-202ENST00000375299 ERO1AQ96HE7 468 aa24.76■■□□□ 1.55
UPF3A-202ENST00000375299 FTOQ9C0B1 505 aaKnown RBP eCLIP24.76■■□□□ 1.55
UPF3A-202ENST00000375299 KMT5BQ4FZB7 885 aa24.75■■□□□ 1.55
UPF3A-202ENST00000375299 CCDC129Q6ZRS4 1044 aa24.75■■□□□ 1.55
UPF3A-202ENST00000375299 ENGASEQ8NFI3 743 aa24.75■■□□□ 1.55
UPF3A-202ENST00000375299 DBNLQ9UJU6 430 aaKnown RBP24.75■■□□□ 1.55
UPF3A-202ENST00000375299 FAM160A1Q05DH4 1040 aa24.75■■□□□ 1.55
UPF3A-202ENST00000375299 USP28Q96RU2 1077 aa24.75■■□□□ 1.55
UPF3A-202ENST00000375299 LRRC2Q9BYS8 371 aa24.75■■□□□ 1.55
UPF3A-202ENST00000375299 FGD1P98174 961 aa24.74■■□□□ 1.55
UPF3A-202ENST00000375299 ATL3Q6DD88 541 aa24.74■■□□□ 1.55
UPF3A-202ENST00000375299 CEP57L1Q8IYX8 460 aa24.74■■□□□ 1.55
UPF3A-202ENST00000375299 ZNF396Q96N95 335 aaPredicted RBP24.74■■□□□ 1.55
UPF3A-202ENST00000375299 RIC3Q7Z5B4 369 aa24.74■■□□□ 1.55
UPF3A-202ENST00000375299 KRT222Q8N1A0 295 aa24.74■■□□□ 1.55
UPF3A-202ENST00000375299 TRMT1Q9NXH9 659 aaKnown RBP24.74■■□□□ 1.55
UPF3A-202ENST00000375299 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.73■■□□□ 1.55
UPF3A-202ENST00000375299 SLFN14P0C7P3 912 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 FOSBP53539 338 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 GSDMDP57764 484 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 MCMDC2Q4G0Z9 681 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 SEC62Q99442 399 aaKnown RBP24.73■■□□□ 1.55
UPF3A-202ENST00000375299 BCL11BQ9C0K0 894 aaPredicted RBP24.73■■□□□ 1.55
UPF3A-202ENST00000375299 SLIT3O75094 1523 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 PTPDC1A2A3K4 754 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 KIF2AO00139 706 aaPredicted RBP24.73■■□□□ 1.55
UPF3A-202ENST00000375299 PDIA6Q15084 440 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 TNNI3KQ59H18 835 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 EPHA10Q5JZY3 1008 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 AOPEPQ8N6M6 819 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 ORAI2Q96SN7 254 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 FPGT-TNNI3KV9GXZ4 949 aa24.73■■□□□ 1.55
UPF3A-202ENST00000375299 ZNF142P52746 1687 aaPredicted RBP24.72■■□□□ 1.55
UPF3A-202ENST00000375299 A0A087WWV3 80 aa24.72■■□□□ 1.55
UPF3A-202ENST00000375299 NEURL1BA8MQ27 555 aa24.72■■□□□ 1.55
UPF3A-202ENST00000375299 CTDNEP1O95476 244 aa24.72■■□□□ 1.55
UPF3A-202ENST00000375299 HMGB1P09429 215 aaKnown RBP24.72■■□□□ 1.55
UPF3A-202ENST00000375299 TAF3Q5VWG9 929 aa24.72■■□□□ 1.55
UPF3A-202ENST00000375299 STOX1Q6ZVD7 989 aa24.72■■□□□ 1.55
UPF3A-202ENST00000375299 FSIP1Q8NA03 581 aa24.72■■□□□ 1.55
UPF3A-202ENST00000375299 COPRSQ9NQ92 184 aa24.72■■□□□ 1.55
UPF3A-202ENST00000375299 NOL12Q9UGY1 213 aaKnown RBP eCLIP24.72■■□□□ 1.55
UPF3A-202ENST00000375299 V9GYY5 206 aaPredicted RBP24.72■■□□□ 1.55
UPF3A-202ENST00000375299 SLU7O95391 586 aaKnown RBP24.72■■□□□ 1.55
UPF3A-202ENST00000375299 SLFNL1Q499Z3 407 aa24.72■■□□□ 1.55
UPF3A-202ENST00000375299 ANKRD24Q8TF21 1146 aa24.72■■□□□ 1.55
UPF3A-202ENST00000375299 CHGBP05060 677 aa24.71■■□□□ 1.55
UPF3A-202ENST00000375299 NEXNQ0ZGT2 675 aa24.71■■□□□ 1.55
UPF3A-202ENST00000375299 NAT10Q9H0A0 1025 aaKnown RBP24.71■■□□□ 1.55
UPF3A-202ENST00000375299 FAM53CQ9NYF3 392 aa24.71■■□□□ 1.55
UPF3A-202ENST00000375299 NDUFB9Q9Y6M9 179 aa24.71■■□□□ 1.55
UPF3A-202ENST00000375299 GCKRQ14397 625 aa24.71■■□□□ 1.55
UPF3A-202ENST00000375299 ELF2Q15723 593 aa24.71■■□□□ 1.55
UPF3A-202ENST00000375299 DHX32Q7L7V1 743 aaKnown RBP24.71■■□□□ 1.55
UPF3A-202ENST00000375299 DNAJC2Q99543 621 aaKnown RBP24.71■■□□□ 1.55
UPF3A-202ENST00000375299 OSBPL5Q9H0X9 879 aaPredicted RBP24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms