RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 CCDC129Q6ZRS4 1044 aa26.32■■□□□ 1.8
TRIM28-202ENST00000341753 NFATC2IPQ8NCF5 419 aa26.32■■□□□ 1.8
TRIM28-202ENST00000341753 IQCB1Q15051 598 aa26.32■■□□□ 1.8
TRIM28-202ENST00000341753 CSB-PGBD3P0DP91 1061 aa26.31■■□□□ 1.8
TRIM28-202ENST00000341753 KSR2Q6VAB6 950 aa26.31■■□□□ 1.8
TRIM28-202ENST00000341753 RAPGEF4Q8WZA2 1011 aa26.31■■□□□ 1.8
TRIM28-202ENST00000341753 GTF3C6Q969F1 213 aa26.31■■□□□ 1.8
TRIM28-202ENST00000341753 CGNQ9P2M7 1197 aaKnown RBP26.31■■□□□ 1.8
TRIM28-202ENST00000341753 Q6ZUG5 572 aa26.3■■□□□ 1.8
TRIM28-202ENST00000341753 ZNF215Q9UL58 517 aaPredicted RBP26.3■■□□□ 1.8
TRIM28-202ENST00000341753 MED23Q9ULK4 1368 aa26.3■■□□□ 1.8
TRIM28-202ENST00000341753 SKILP12757 684 aa26.3■■□□□ 1.8
TRIM28-202ENST00000341753 TAF5LO75529 589 aa26.3■■□□□ 1.8
TRIM28-202ENST00000341753 ATF3P18847 181 aa26.3■■□□□ 1.8
TRIM28-202ENST00000341753 GOLPH3LQ9H4A5 285 aa26.3■■□□□ 1.8
TRIM28-202ENST00000341753 DDX41Q9UJV9 622 aaKnown RBP26.3■■□□□ 1.8
TRIM28-202ENST00000341753 GRM8O00222 908 aa26.29■■□□□ 1.8
TRIM28-202ENST00000341753 ALDH1L1O75891 902 aa26.29■■□□□ 1.8
TRIM28-202ENST00000341753 PODXL2Q9NZ53 605 aa26.29■■□□□ 1.8
TRIM28-202ENST00000341753 TRPM3Q9HCF6 1732 aaPredicted RBP26.29■■□□□ 1.8
TRIM28-202ENST00000341753 NPHP1O15259 732 aa26.29■■□□□ 1.8
TRIM28-202ENST00000341753 PDIA6Q15084 440 aa26.29■■□□□ 1.8
TRIM28-202ENST00000341753 SEC62Q99442 399 aaKnown RBP26.29■■□□□ 1.8
TRIM28-202ENST00000341753 PHRF1Q9P1Y6 1649 aaKnown RBP26.29■■□□□ 1.8
TRIM28-202ENST00000341753 COL15A1P39059 1388 aa26.28■■□□□ 1.8
TRIM28-202ENST00000341753 PDIA4P13667 645 aaKnown RBP26.28■■□□□ 1.8
TRIM28-202ENST00000341753 SYCP1Q15431 976 aa26.28■■□□□ 1.8
TRIM28-202ENST00000341753 CCAR1Q8IX12 1150 aaKnown RBP26.28■■□□□ 1.8
TRIM28-202ENST00000341753 NCAPD2Q15021 1401 aa26.28■■□□□ 1.8
TRIM28-202ENST00000341753 CCDC9Q9Y3X0 531 aaKnown RBP26.28■■□□□ 1.8
TRIM28-202ENST00000341753 TMEM94Q12767 1356 aa26.27■■□□□ 1.8
TRIM28-202ENST00000341753 CCDC69A6NI79 296 aa26.27■■□□□ 1.8
TRIM28-202ENST00000341753 BECN2A8MW95 431 aa26.27■■□□□ 1.8
TRIM28-202ENST00000341753 PTPN14Q15678 1187 aa26.27■■□□□ 1.8
TRIM28-202ENST00000341753 KIF18AQ8NI77 898 aa26.27■■□□□ 1.8
TRIM28-202ENST00000341753 NEK1Q96PY6 1258 aa26.27■■□□□ 1.8
TRIM28-202ENST00000341753 ZNF790Q6PG37 636 aa26.27■■□□□ 1.8
TRIM28-202ENST00000341753 SNRKQ9NRH2 765 aa26.27■■□□□ 1.8
TRIM28-202ENST00000341753 KMT5BQ4FZB7 885 aa26.26■■□□□ 1.79
TRIM28-202ENST00000341753 SYTL4Q96C24 671 aaPredicted RBP26.26■■□□□ 1.79
TRIM28-202ENST00000341753 HEG1Q9ULI3 1381 aa26.26■■□□□ 1.79
TRIM28-202ENST00000341753 FGD1P98174 961 aa26.26■■□□□ 1.79
TRIM28-202ENST00000341753 SCRN1Q12765 414 aa26.26■■□□□ 1.79
TRIM28-202ENST00000341753 CDC25BP30305 580 aa26.25■■□□□ 1.79
TRIM28-202ENST00000341753 GUCY1B3Q02153 619 aa26.25■■□□□ 1.79
TRIM28-202ENST00000341753 KDM6AO15550 1401 aaPredicted RBP26.24■■□□□ 1.79
TRIM28-202ENST00000341753 STX1AQ16623 288 aa26.24■■□□□ 1.79
TRIM28-202ENST00000341753 ZNF496Q96IT1 587 aaPredicted RBP26.24■■□□□ 1.79
TRIM28-202ENST00000341753 HMG20BQ9P0W2 317 aa26.24■■□□□ 1.79
TRIM28-202ENST00000341753 ELF2Q15723 593 aa26.24■■□□□ 1.79
TRIM28-202ENST00000341753 RIC3Q7Z5B4 369 aa26.24■■□□□ 1.79
TRIM28-202ENST00000341753 ALDH8A1Q9H2A2 487 aaPredicted RBP26.24■■□□□ 1.79
TRIM28-202ENST00000341753 CFAP45Q9UL16 551 aa26.24■■□□□ 1.79
TRIM28-202ENST00000341753 IGKV5-2P06315 115 aa26.23■■□□□ 1.79
TRIM28-202ENST00000341753 PHKG2P15735 406 aa26.23■■□□□ 1.79
TRIM28-202ENST00000341753 HSPA2P54652 639 aa26.23■■□□□ 1.79
TRIM28-202ENST00000341753 DNAJC2Q99543 621 aaKnown RBP26.23■■□□□ 1.79
TRIM28-202ENST00000341753 SLC52A2Q9HAB3 445 aa26.23■■□□□ 1.79
TRIM28-202ENST00000341753 DDX21Q9NR30 783 aaKnown RBP eCLIP26.23■■□□□ 1.79
TRIM28-202ENST00000341753 NAP1L2Q9ULW6 460 aaPredicted RBP26.23■■□□□ 1.79
TRIM28-202ENST00000341753 MEGF6O75095 1541 aa26.23■■□□□ 1.79
TRIM28-202ENST00000341753 ADD1P35611 737 aaKnown RBP26.23■■□□□ 1.79
TRIM28-202ENST00000341753 CCZ1BP86790 482 aa26.23■■□□□ 1.79
TRIM28-202ENST00000341753 CCZ1P86791 482 aaPredicted RBP26.23■■□□□ 1.79
TRIM28-202ENST00000341753 DHX40Q8IX18 779 aaKnown RBP26.23■■□□□ 1.79
TRIM28-202ENST00000341753 TATP17735 454 aaPredicted RBP26.23■■□□□ 1.79
TRIM28-202ENST00000341753 AOPEPQ8N6M6 819 aa26.23■■□□□ 1.79
TRIM28-202ENST00000341753 LINS1Q8NG48 757 aa26.23■■□□□ 1.79
TRIM28-202ENST00000341753 XAGE3Q8WTP9 111 aa26.23■■□□□ 1.79
TRIM28-202ENST00000341753 MRFAP1L1Q96HT8 127 aa26.23■■□□□ 1.79
TRIM28-202ENST00000341753 CYP21A2P08686 494 aa26.22■■□□□ 1.79
TRIM28-202ENST00000341753 EPHA10Q5JZY3 1008 aa26.22■■□□□ 1.79
TRIM28-202ENST00000341753 SARM1Q6SZW1 724 aa26.22■■□□□ 1.79
TRIM28-202ENST00000341753 NYAP1Q6ZVC0 841 aa26.22■■□□□ 1.79
TRIM28-202ENST00000341753 USP28Q96RU2 1077 aa26.22■■□□□ 1.79
TRIM28-202ENST00000341753 RBM6P78332 1123 aaKnown RBP26.22■■□□□ 1.79
TRIM28-202ENST00000341753 CCT2P78371 535 aaKnown RBP26.22■■□□□ 1.79
TRIM28-202ENST00000341753 SLFNL1Q499Z3 407 aa26.22■■□□□ 1.79
TRIM28-202ENST00000341753 COPS6Q7L5N1 327 aa26.22■■□□□ 1.79
TRIM28-202ENST00000341753 MORC2Q9Y6X9 1032 aaPredicted RBP26.21■■□□□ 1.79
TRIM28-202ENST00000341753 FBXO38Q6PIJ6 1188 aa26.21■■□□□ 1.79
TRIM28-202ENST00000341753 ZSCAN16Q9H4T2 348 aaPredicted RBP26.21■■□□□ 1.79
TRIM28-202ENST00000341753 SLFN14P0C7P3 912 aa26.2■■□□□ 1.79
TRIM28-202ENST00000341753 SNW1Q13573 536 aaKnown RBP26.2■■□□□ 1.79
TRIM28-202ENST00000341753 TSGA10IPQ3SY00 556 aa26.2■■□□□ 1.79
TRIM28-202ENST00000341753 CCDC73Q6ZRK6 1079 aa26.2■■□□□ 1.79
TRIM28-202ENST00000341753 CHMP4AQ9BY43 222 aa26.2■■□□□ 1.79
TRIM28-202ENST00000341753 ST7Q9NRC1 585 aa26.2■■□□□ 1.79
TRIM28-202ENST00000341753 MST1RQ04912 1400 aa26.2■■□□□ 1.78
TRIM28-202ENST00000341753 CYP27B1O15528 508 aa26.2■■□□□ 1.78
TRIM28-202ENST00000341753 MYD88Q99836 296 aa26.2■■□□□ 1.78
TRIM28-202ENST00000341753 NCOA5Q9HCD5 579 aaKnown RBP26.2■■□□□ 1.78
TRIM28-202ENST00000341753 KINO60870 393 aaKnown RBP26.19■■□□□ 1.78
TRIM28-202ENST00000341753 STOX1Q6ZVD7 989 aa26.19■■□□□ 1.78
TRIM28-202ENST00000341753 ZNF397Q8NF99 534 aaPredicted RBP26.19■■□□□ 1.78
TRIM28-202ENST00000341753 DBNLQ9UJU6 430 aaKnown RBP26.19■■□□□ 1.78
TRIM28-202ENST00000341753 APOBRQ0VD83 1088 aa26.19■■□□□ 1.78
TRIM28-202ENST00000341753 KRT32Q14532 448 aa26.19■■□□□ 1.78
TRIM28-202ENST00000341753 USPL1Q5W0Q7 1092 aa26.19■■□□□ 1.78
TRIM28-202ENST00000341753 CCAR2Q8N163 923 aaKnown RBP26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms