RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 PTPDC1A2A3K4 754 aa15.15■□□□□ 0.02
HMGCS1-201ENST00000325110 BIN1O00499 593 aa15.15■□□□□ 0.02
HMGCS1-201ENST00000325110 PTPN12Q05209 780 aaKnown RBP15.15■□□□□ 0.02
HMGCS1-201ENST00000325110 GTF3C6Q969F1 213 aa15.15■□□□□ 0.02
HMGCS1-201ENST00000325110 USP42Q9H9J4 1324 aaKnown RBP15.15■□□□□ 0.02
HMGCS1-201ENST00000325110 PIK3C2AO00443 1686 aa15.15■□□□□ 0.02
HMGCS1-201ENST00000325110 RIOK3O14730 519 aaKnown RBP15.15■□□□□ 0.02
HMGCS1-201ENST00000325110 ISM2Q6H9L7 571 aa15.15■□□□□ 0.02
HMGCS1-201ENST00000325110 PRIMPOLQ96LW4 560 aa15.15■□□□□ 0.02
HMGCS1-201ENST00000325110 PPP4R3BQ5MIZ7 849 aa15.14■□□□□ 0.01
HMGCS1-201ENST00000325110 TTLL5Q6EMB2 1281 aa15.14■□□□□ 0.01
HMGCS1-201ENST00000325110 FSIP1Q8NA03 581 aa15.14■□□□□ 0.01
HMGCS1-201ENST00000325110 TPM3P06753 285 aa15.14■□□□□ 0.01
HMGCS1-201ENST00000325110 MTERF4Q7Z6M4 381 aaKnown RBP15.14■□□□□ 0.01
HMGCS1-201ENST00000325110 PAG1Q9NWQ8 432 aa15.14■□□□□ 0.01
HMGCS1-201ENST00000325110 SCRN1Q12765 414 aa15.14■□□□□ 0.01
HMGCS1-201ENST00000325110 PDIA6Q15084 440 aa15.14■□□□□ 0.01
HMGCS1-201ENST00000325110 STK38Q15208 465 aa15.14■□□□□ 0.01
HMGCS1-201ENST00000325110 A1BGP04217 495 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 TNNT1P13805 278 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 ATP5JP18859 108 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 KCNF1Q9H3M0 494 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 A0A0G2JLW4 131 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 PHKG2P15735 406 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 PDCL2Q8N4E4 241 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 PGBD1Q96JS3 809 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 CLSTN2Q9H4D0 955 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 STRN4Q9NRL3 753 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 ERBB3P21860 1342 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 TTLL7Q6ZT98 887 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 TOM1L2Q6ZVM7 507 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 RALYLQ86SE5 291 aaKnown RBP15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 TOMM22Q9NS69 142 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 CEP126Q9P2H0 1117 aa15.13■□□□□ 0.01
HMGCS1-201ENST00000325110 RGPD1P0DJD0 1748 aa15.12■□□□□ 0.01
HMGCS1-201ENST00000325110 TTC39AQ5SRH9 613 aa15.12■□□□□ 0.01
HMGCS1-201ENST00000325110 KIAA1524Q8TCG1 905 aa15.12■□□□□ 0.01
HMGCS1-201ENST00000325110 SMC2O95347 1197 aa15.12■□□□□ 0.01
HMGCS1-201ENST00000325110 LRRC24Q50LG9 513 aa15.12■□□□□ 0.01
HMGCS1-201ENST00000325110 GPHNQ9NQX3 736 aaPredicted RBP15.12■□□□□ 0.01
HMGCS1-201ENST00000325110 DHX32Q7L7V1 743 aaKnown RBP15.12■□□□□ 0.01
HMGCS1-201ENST00000325110 FUCA2Q9BTY2 467 aa15.12■□□□□ 0.01
HMGCS1-201ENST00000325110 BCL2L12Q9HB09 334 aa15.12■□□□□ 0.01
HMGCS1-201ENST00000325110 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.12■□□□□ 0.01
HMGCS1-201ENST00000325110 V9GYY5 206 aaPredicted RBP15.12■□□□□ 0.01
HMGCS1-201ENST00000325110 IGSF3O75054 1194 aa15.11■□□□□ 0.01
HMGCS1-201ENST00000325110 KBTBD3Q8NAB2 608 aa15.11■□□□□ 0.01
HMGCS1-201ENST00000325110 USP28Q96RU2 1077 aa15.11■□□□□ 0.01
HMGCS1-201ENST00000325110 COPRSQ9NQ92 184 aa15.11■□□□□ 0.01
HMGCS1-201ENST00000325110 CCDC57Q2TAC2 916 aa15.11■□□□□ 0.01
HMGCS1-201ENST00000325110 ZNF396Q96N95 335 aaPredicted RBP15.11■□□□□ 0.01
HMGCS1-201ENST00000325110 A0A1B0GVL5 298 aa15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 ZNF75DP51815 510 aa15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 SYNE3Q6ZMZ3 975 aa15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 CWC25Q9NXE8 425 aaPredicted RBP15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 ZHX1Q9UKY1 873 aaPredicted RBP15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 FMN2Q9NZ56 1722 aa15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 KAT6BQ8WYB5 2073 aa15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 FAM208AQ9UK61 1670 aaKnown RBP15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 CCDC144CPQ8IYA2 1237 aa15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 RXRAP19793 462 aa15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 ARID5BQ14865 1188 aa15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 STOX1Q6ZVD7 989 aa15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 AOPEPQ8N6M6 819 aa15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 CCDC112Q8NEF3 446 aa15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 PUS3Q9BZE2 481 aaKnown RBP15.1■□□□□ 0.01
HMGCS1-201ENST00000325110 A0A1B0GUL7 405 aa15.09■□□□□ 0.01
HMGCS1-201ENST00000325110 GOLGA8BA8MQT2 603 aa15.09■□□□□ 0.01
HMGCS1-201ENST00000325110 CCDC158Q5M9N0 1113 aa15.09■□□□□ 0.01
HMGCS1-201ENST00000325110 ZSCAN16Q9H4T2 348 aaPredicted RBP15.09■□□□□ 0.01
HMGCS1-201ENST00000325110 PRDM11Q9NQV5 511 aa15.09■□□□□ 0.01
HMGCS1-201ENST00000325110 XRN1Q8IZH2 1706 aaKnown RBP15.09■□□□□ 0.01
HMGCS1-201ENST00000325110 GPTP24298 496 aa15.09■□□□□ 0.01
HMGCS1-201ENST00000325110 C11orf57Q6ZUT1 292 aaPredicted RBP15.09■□□□□ 0.01
HMGCS1-201ENST00000325110 IL17RAQ96F46 866 aa15.09■□□□□ 0.01
HMGCS1-201ENST00000325110 SYTL4Q96C24 671 aaPredicted RBP15.09■□□□□ 0.01
HMGCS1-201ENST00000325110 GJB4Q9NTQ9 266 aa15.09■□□□□ 0.01
HMGCS1-201ENST00000325110 PDIA4P13667 645 aaKnown RBP15.08■□□□□ 0.01
HMGCS1-201ENST00000325110 RESTQ13127 1097 aa15.08■□□□□ 0.01
HMGCS1-201ENST00000325110 CEP57L1Q8IYX8 460 aa15.08■□□□□ 0.01
HMGCS1-201ENST00000325110 C8orf76Q96K31 380 aa15.08■□□□□ 0.01
HMGCS1-201ENST00000325110 HAUS7Q99871 368 aa15.08■□□□□ 0.01
HMGCS1-201ENST00000325110 NWD1Q149M9 1564 aa15.08■□□□□ 0.01
HMGCS1-201ENST00000325110 KLF18A0A0U1RQI7 1052 aa15.08■□□□□ 0
HMGCS1-201ENST00000325110 CYP27B1O15528 508 aa15.08■□□□□ 0
HMGCS1-201ENST00000325110 DCAF5Q96JK2 942 aa15.08■□□□□ 0
HMGCS1-201ENST00000325110 MED23Q9ULK4 1368 aa15.08■□□□□ 0
HMGCS1-201ENST00000325110 E7EWF7 191 aa15.08■□□□□ 0
HMGCS1-201ENST00000325110 ATP2B1P20020 1258 aa15.08■□□□□ 0
HMGCS1-201ENST00000325110 STX1AQ16623 288 aa15.08■□□□□ 0
HMGCS1-201ENST00000325110 ELP1O95163 1332 aa15.07■□□□□ 0
HMGCS1-201ENST00000325110 IDH1O75874 414 aaKnown RBP15.07■□□□□ 0
HMGCS1-201ENST00000325110 HMGB1P09429 215 aaKnown RBP15.07■□□□□ 0
HMGCS1-201ENST00000325110 TRDNQ13061 729 aa15.07■□□□□ 0
HMGCS1-201ENST00000325110 ZSCAN25Q6NSZ9 544 aa15.07■□□□□ 0
HMGCS1-201ENST00000325110 NSUN7Q8NE18 718 aaKnown RBP15.07■□□□□ 0
HMGCS1-201ENST00000325110 ORC3Q9UBD5 711 aaPredicted RBP15.07■□□□□ 0
HMGCS1-201ENST00000325110 ZNF609O15014 1411 aa15.07■□□□□ 0
HMGCS1-201ENST00000325110 TOPAZ1Q8N9V7 1692 aa15.07■□□□□ 0
HMGCS1-201ENST00000325110 U2AF2P26368 475 aaKnown RBP eCLIP15.07■□□□□ 07e-13■■□□□ 12.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms