RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 KCNF1Q9H3M0 494 aa25.21■■□□□ 1.63
TRIM28-201ENST00000253024 ATP5JP18859 108 aa25.2■■□□□ 1.63
TRIM28-201ENST00000253024 MCMDC2Q4G0Z9 681 aa25.2■■□□□ 1.63
TRIM28-201ENST00000253024 COPRSQ9NQ92 184 aa25.2■■□□□ 1.63
TRIM28-201ENST00000253024 UTYO14607 1347 aa25.2■■□□□ 1.62
TRIM28-201ENST00000253024 KCNB2Q92953 911 aa25.2■■□□□ 1.62
TRIM28-201ENST00000253024 WASHC4Q2M389 1173 aa25.19■■□□□ 1.62
TRIM28-201ENST00000253024 LRP10Q7Z4F1 713 aa25.19■■□□□ 1.62
TRIM28-201ENST00000253024 TRIM5Q9C035 493 aa25.19■■□□□ 1.62
TRIM28-201ENST00000253024 C19orf44Q9H6X5 657 aa25.19■■□□□ 1.62
TRIM28-201ENST00000253024 GORABQ5T7V8 394 aa25.19■■□□□ 1.62
TRIM28-201ENST00000253024 HSPA2P54652 639 aa25.18■■□□□ 1.62
TRIM28-201ENST00000253024 GTF3C6Q969F1 213 aa25.18■■□□□ 1.62
TRIM28-201ENST00000253024 PDCP20941 246 aa25.18■■□□□ 1.62
TRIM28-201ENST00000253024 SASS6Q6UVJ0 657 aa25.18■■□□□ 1.62
TRIM28-201ENST00000253024 CBX8Q9HC52 389 aa25.18■■□□□ 1.62
TRIM28-201ENST00000253024 LETM1O95202 739 aaPredicted RBP25.17■■□□□ 1.62
TRIM28-201ENST00000253024 ANKRD1Q15327 319 aa25.17■■□□□ 1.62
TRIM28-201ENST00000253024 PAG1Q9NWQ8 432 aa25.17■■□□□ 1.62
TRIM28-201ENST00000253024 ADORA1P30542 326 aa25.17■■□□□ 1.62
TRIM28-201ENST00000253024 DCAF5Q96JK2 942 aa25.17■■□□□ 1.62
TRIM28-201ENST00000253024 CCDC186Q7Z3E2 898 aa25.17■■□□□ 1.62
TRIM28-201ENST00000253024 FAM89AQ96GI7 184 aa25.16■■□□□ 1.62
TRIM28-201ENST00000253024 PRDM10Q9NQV6 1147 aa25.16■■□□□ 1.62
TRIM28-201ENST00000253024 IFIT1P09914 478 aaKnown RBP25.16■■□□□ 1.62
TRIM28-201ENST00000253024 UVSSAQ2YD98 709 aa25.16■■□□□ 1.62
TRIM28-201ENST00000253024 PIBF1Q8WXW3 757 aa25.16■■□□□ 1.62
TRIM28-201ENST00000253024 GPTP24298 496 aa25.15■■□□□ 1.62
TRIM28-201ENST00000253024 GLIPR1L2Q4G1C9 344 aa25.15■■□□□ 1.62
TRIM28-201ENST00000253024 STK11IPQ8N1F8 1099 aa25.15■■□□□ 1.62
TRIM28-201ENST00000253024 A0A1B0GUL7 405 aa25.14■■□□□ 1.62
TRIM28-201ENST00000253024 PTPDC1A2A3K4 754 aa25.14■■□□□ 1.62
TRIM28-201ENST00000253024 HAUS7Q99871 368 aa25.14■■□□□ 1.62
TRIM28-201ENST00000253024 PRDM11Q9NQV5 511 aa25.14■■□□□ 1.62
TRIM28-201ENST00000253024 POLR3DP05423 398 aaPredicted RBP25.14■■□□□ 1.62
TRIM28-201ENST00000253024 MCM5P33992 734 aa25.14■■□□□ 1.62
TRIM28-201ENST00000253024 FOXO4P98177 505 aa25.14■■□□□ 1.62
TRIM28-201ENST00000253024 ATG9AQ7Z3C6 839 aa25.14■■□□□ 1.62
TRIM28-201ENST00000253024 FAM200AQ8TCP9 573 aa25.14■■□□□ 1.61
TRIM28-201ENST00000253024 RXRAP19793 462 aa25.13■■□□□ 1.61
TRIM28-201ENST00000253024 ARID5BQ14865 1188 aa25.13■■□□□ 1.61
TRIM28-201ENST00000253024 KBTBD3Q8NAB2 608 aa25.13■■□□□ 1.61
TRIM28-201ENST00000253024 DENND2AQ9ULE3 1009 aa25.13■■□□□ 1.61
TRIM28-201ENST00000253024 LMO7Q8WWI1 1683 aa25.13■■□□□ 1.61
TRIM28-201ENST00000253024 C1orf167Q5SNV9 1468 aa25.13■■□□□ 1.61
TRIM28-201ENST00000253024 NCAPD2Q15021 1401 aa25.13■■□□□ 1.61
TRIM28-201ENST00000253024 ZNF165P49910 485 aa25.13■■□□□ 1.61
TRIM28-201ENST00000253024 CHD2O14647 1828 aaKnown RBP25.13■■□□□ 1.61
TRIM28-201ENST00000253024 M0R2C6 588 aa25.12■■□□□ 1.61
TRIM28-201ENST00000253024 PLBD2Q8NHP8 589 aa25.12■■□□□ 1.61
TRIM28-201ENST00000253024 SCAND2PQ9GZW5 306 aaPredicted RBP25.12■■□□□ 1.61
TRIM28-201ENST00000253024 SCARF1Q14162 830 aa25.12■■□□□ 1.61
TRIM28-201ENST00000253024 ISM2Q6H9L7 571 aa25.12■■□□□ 1.61
TRIM28-201ENST00000253024 C16orf45Q96MC5 204 aaPredicted RBP25.12■■□□□ 1.61
TRIM28-201ENST00000253024 PDCL3Q9H2J4 239 aa25.12■■□□□ 1.61
TRIM28-201ENST00000253024 CWC25Q9NXE8 425 aaPredicted RBP25.12■■□□□ 1.61
TRIM28-201ENST00000253024 HMG20BQ9P0W2 317 aa25.12■■□□□ 1.61
TRIM28-201ENST00000253024 U3KPZ7 1027 aaPredicted RBP25.12■■□□□ 1.61
TRIM28-201ENST00000253024 CTDNEP1O95476 244 aa25.11■■□□□ 1.61
TRIM28-201ENST00000253024 USP28Q96RU2 1077 aa25.11■■□□□ 1.61
TRIM28-201ENST00000253024 ZMYND15Q9H091 742 aa25.11■■□□□ 1.61
TRIM28-201ENST00000253024 TMEM94Q12767 1356 aa25.11■■□□□ 1.61
TRIM28-201ENST00000253024 HSPD1P10809 573 aaKnown RBP25.11■■□□□ 1.61
TRIM28-201ENST00000253024 ME1P48163 572 aa25.11■■□□□ 1.61
TRIM28-201ENST00000253024 RESTQ13127 1097 aa25.11■■□□□ 1.61
TRIM28-201ENST00000253024 TAF7LQ5H9L4 462 aa25.11■■□□□ 1.61
TRIM28-201ENST00000253024 E7EWF7 191 aa25.1■■□□□ 1.61
TRIM28-201ENST00000253024 OSBP2Q969R2 916 aa25.1■■□□□ 1.61
TRIM28-201ENST00000253024 C11orf57Q6ZUT1 292 aaPredicted RBP25.09■■□□□ 1.61
TRIM28-201ENST00000253024 CCAR1Q8IX12 1150 aaKnown RBP25.09■■□□□ 1.61
TRIM28-201ENST00000253024 CCDC144CPQ8IYA2 1237 aa25.09■■□□□ 1.61
TRIM28-201ENST00000253024 ZNF592Q92610 1267 aa25.09■■□□□ 1.61
TRIM28-201ENST00000253024 GOLPH3LQ9H4A5 285 aa25.09■■□□□ 1.61
TRIM28-201ENST00000253024 CASP7P55210 303 aa25.09■■□□□ 1.61
TRIM28-201ENST00000253024 NSUN7Q8NE18 718 aaKnown RBP25.09■■□□□ 1.61
TRIM28-201ENST00000253024 C5P01031 1676 aa25.09■■□□□ 1.61
TRIM28-201ENST00000253024 MAST3O60307 1309 aa25.09■■□□□ 1.61
TRIM28-201ENST00000253024 KRT32Q14532 448 aa25.08■■□□□ 1.61
TRIM28-201ENST00000253024 N4BP2Q86UW6 1770 aaPredicted RBP25.08■■□□□ 1.61
TRIM28-201ENST00000253024 RABL6Q3YEC7 729 aaPredicted RBP25.08■■□□□ 1.61
TRIM28-201ENST00000253024 DHX32Q7L7V1 743 aaKnown RBP25.08■■□□□ 1.6
TRIM28-201ENST00000253024 BIN1O00499 593 aa25.07■■□□□ 1.6
TRIM28-201ENST00000253024 FILIP1Q7Z7B0 1213 aa25.07■■□□□ 1.6
TRIM28-201ENST00000253024 USPL1Q5W0Q7 1092 aa25.07■■□□□ 1.6
TRIM28-201ENST00000253024 SYTL4Q96C24 671 aaPredicted RBP25.07■■□□□ 1.6
TRIM28-201ENST00000253024 SNAP23O00161 211 aa25.06■■□□□ 1.6
TRIM28-201ENST00000253024 A0A1B0GVL5 298 aa25.06■■□□□ 1.6
TRIM28-201ENST00000253024 CLSTN2Q9H4D0 955 aa25.06■■□□□ 1.6
TRIM28-201ENST00000253024 TTC39AQ5SRH9 613 aa25.05■■□□□ 1.6
TRIM28-201ENST00000253024 ZCRB1Q8TBF4 217 aaKnown RBP25.05■■□□□ 1.6
TRIM28-201ENST00000253024 CCDC57Q2TAC2 916 aa25.05■■□□□ 1.6
TRIM28-201ENST00000253024 CEP126Q9P2H0 1117 aa25.05■■□□□ 1.6
TRIM28-201ENST00000253024 CCDC144BQ3MJ40 725 aa25.05■■□□□ 1.6
TRIM28-201ENST00000253024 HELBQ8NG08 1087 aaPredicted RBP25.05■■□□□ 1.6
TRIM28-201ENST00000253024 INCENPQ9NQS7 918 aa25.05■■□□□ 1.6
TRIM28-201ENST00000253024 EYA2O00167 538 aa25.04■■□□□ 1.6
TRIM28-201ENST00000253024 APPP05067 770 aa25.04■■□□□ 1.6
TRIM28-201ENST00000253024 ZAP70P43403 619 aa25.04■■□□□ 1.6
TRIM28-201ENST00000253024 KIAA1524Q8TCG1 905 aa25.04■■□□□ 1.6
TRIM28-201ENST00000253024 NKX2-3Q8TAU0 364 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms