RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 RBM34P42696 430 aaKnown RBP17.96■□□□□ 0.47
COL9A3-207ENST00000467819 FMODQ06828 376 aa17.96■□□□□ 0.47
COL9A3-207ENST00000467819 PIN1Q13526 163 aaPredicted RBP17.96■□□□□ 0.47
COL9A3-207ENST00000467819 CYLC2Q14093 348 aaPredicted RBP17.96■□□□□ 0.47
COL9A3-207ENST00000467819 TSTQ16762 297 aaKnown RBP17.96■□□□□ 0.47
COL9A3-207ENST00000467819 C10orf128Q5T292 105 aa17.96■□□□□ 0.47
COL9A3-207ENST00000467819 C12orf54Q6X4T0 127 aa17.96■□□□□ 0.47
COL9A3-207ENST00000467819 USP51Q70EK9 711 aa17.96■□□□□ 0.47
COL9A3-207ENST00000467819 CPEB3Q8NE35 698 aaKnown RBP17.96■□□□□ 0.47
COL9A3-207ENST00000467819 SEMA6DQ8NFY4 1073 aa17.96■□□□□ 0.47
COL9A3-207ENST00000467819 TMEM239Q8WW34 195 aa17.96■□□□□ 0.47
COL9A3-207ENST00000467819 DECR2Q9NUI1 292 aa17.96■□□□□ 0.47
COL9A3-207ENST00000467819 NKIRAS2Q9NYR9 191 aa17.96■□□□□ 0.47
COL9A3-207ENST00000467819 RIMS3Q9UJD0 308 aa17.96■□□□□ 0.47
COL9A3-207ENST00000467819 BAG5Q9UL15 447 aa17.96■□□□□ 0.47
COL9A3-207ENST00000467819 TANC2Q9HCD6 1990 aa17.96■□□□□ 0.47
COL9A3-207ENST00000467819 A0A0A6YYJ9 748 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 CENPBD1B2RD01 187 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 HMGB1P1B2RPK0 211 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-207ENST00000467819 OR5F1O95221 314 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 PNPP00491 289 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 CRYBB2P43320 205 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 OR1E2P47887 323 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 ZNF133P52736 654 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-207ENST00000467819 TEKQ02763 1124 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 CD47Q08722 323 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 SPATA46Q5T0L3 261 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 ARMC4Q5T2S8 1044 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 NSMAFQ92636 917 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 HDAC2Q92769 488 aaKnown RBP17.95■□□□□ 0.46
COL9A3-207ENST00000467819 ECSITQ9BQ95 431 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 SIAEQ9HAT2 523 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 UGT2A1Q9Y4X1 527 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 CACNG2Q9Y698 323 aa17.95■□□□□ 0.46
COL9A3-207ENST00000467819 IGKV1D-43A0A0B4J1Z2 117 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 MT-ND5P03915 603 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 ZNF32P17041 273 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 STOMP27105 288 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 MRPS34P82930 218 aaKnown RBP17.94■□□□□ 0.46
COL9A3-207ENST00000467819 SCGB2A2Q13296 93 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 TOP3AQ13472 1001 aaPredicted RBP17.94■□□□□ 0.46
COL9A3-207ENST00000467819 LAPTM4AQ15012 233 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 SGCAQ16586 387 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 MOGQ16653 247 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 MMEL1Q495T6 779 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 ACSM5Q6NUN0 579 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 CALHM3Q86XJ0 350 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 NABP1Q96AH0 204 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 SAP30LQ9HAJ7 183 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 STX18Q9P2W9 335 aaKnown RBP17.94■□□□□ 0.46
COL9A3-207ENST00000467819 MED31Q9Y3C7 131 aa17.94■□□□□ 0.46
COL9A3-207ENST00000467819 LOC105371242A0A075B767 164 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 C5orf49A4QMS7 147 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 CLDN25C9JDP6 229 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 FXYD1O00168 92 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 MGRN1O60291 552 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 PIP5K1CO60331 668 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 MPZL1O95297 269 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 IGHV3-13P01766 116 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 ANPEPP15144 967 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 MPV17P39210 176 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 WNT5AP41221 380 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 ZNF81P51508 661 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 ERVK-25P63136 954 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 C1orf229Q6ZS94 237 aaPredicted RBP17.93■□□□□ 0.46
COL9A3-207ENST00000467819 ZNF101Q8IZC7 436 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 AKR7LQ8NHP1 331 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 ZNF418Q8TF45 676 aaPredicted RBP17.93■□□□□ 0.46
COL9A3-207ENST00000467819 IPCEF1Q8WWN9 437 aaPredicted RBP17.93■□□□□ 0.46
COL9A3-207ENST00000467819 LRRC58Q96CX6 371 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 RAB39BQ96DA2 213 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 SH3GL1Q99961 368 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 SIKE1Q9BRV8 207 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 TMEM120AQ9BXJ8 343 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 POLR2J2Q9GZM3 115 aaKnown RBP17.93■□□□□ 0.46
COL9A3-207ENST00000467819 POLR2J3Q9H1A7 115 aaKnown RBP17.93■□□□□ 0.46
COL9A3-207ENST00000467819 G6PC2Q9NQR9 355 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 WIPI2Q9Y4P8 454 aa17.93■□□□□ 0.46
COL9A3-207ENST00000467819 SPRY3O43610 288 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 IGF2P01344 180 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 TSPAN19P0C672 248 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 MAKP20794 623 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 EPHA1P21709 976 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 GCH1P30793 250 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 HFEQ30201 348 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 ZNF718Q3SXZ3 478 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 LRRC23Q53EV4 343 aaPredicted RBP17.92■□□□□ 0.46
COL9A3-207ENST00000467819 THEM4Q5T1C6 240 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 METTL21CQ5VZV1 264 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 ZNF771Q7L3S4 317 aaPredicted RBP17.92■□□□□ 0.46
COL9A3-207ENST00000467819 OR8J3Q8NGG0 315 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 LIPHQ8WWY8 451 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 NMD3Q96D46 503 aaKnown RBP17.92■□□□□ 0.46
COL9A3-207ENST00000467819 POM121L2Q96KW2 1035 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 TXNIPQ9H3M7 391 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 SMURF2Q9HAU4 748 aa17.92■□□□□ 0.46
COL9A3-207ENST00000467819 EIF3KQ9UBQ5 218 aaKnown RBP17.92■□□□□ 0.46
COL9A3-207ENST00000467819 LOC100509620A0A075B734 347 aa17.91■□□□□ 0.46
COL9A3-207ENST00000467819 MRASO14807 208 aa17.91■□□□□ 0.46
COL9A3-207ENST00000467819 PLPP2O43688 288 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms