RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SLC16A14Q7RTX9 510 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 TMEM239Q8WW34 195 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 LIPHQ8WWY8 451 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 ASB10Q8WXI3 467 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 RDH5Q92781 318 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 ZNF347Q96SE7 839 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 CDH20Q9HBT6 801 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 INIPQ9NRY2 104 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 DUSP13Q9UII6 198 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 A0A1W2PPW3 197 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 HAX1O00165 279 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 MGRN1O60291 552 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 SHOX2O60902 331 aaPredicted RBP14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 TRMUO75648 421 aaKnown RBP14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 SASH3O75995 380 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 SNAP29O95721 258 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 PTHP01270 115 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 TSPAN19P0C672 248 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 THRBP10828 461 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 ACADSP16219 412 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 COL8A2P25067 703 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 AQP2P41181 271 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 ZNF133P52736 654 aaPredicted RBP14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 MYBPC1Q00872 1141 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 PIN1Q13526 163 aaPredicted RBP14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 C10orf128Q5T292 105 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 PAQR4Q8N4S7 273 aaPredicted RBP14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 SYT14Q8NB59 555 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 OR1J2Q8NGS2 313 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 C10orf82Q8WW14 230 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 SAR1AQ9NR31 198 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 C20orf141Q9NUB4 165 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 STX18Q9P2W9 335 aaKnown RBP14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 MED31Q9Y3C7 131 aa14.21□□□□□ -0.13
CCDC28B-204ENST00000469003 NPIPB13A6NJU9 1138 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 FAM220BPB1ANY3 271 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 NPIPB4C9JG80 1138 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 FAM157BP0CG42 384 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 NAT2P11245 290 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 CCL2P13500 99 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 GPR6P46095 362 aaPredicted RBP14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 OR1E2P47887 323 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 SELENOVP59797 346 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 MRPS11P82912 194 aaKnown RBP14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 PLP2Q04941 152 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 CCNIQ14094 377 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 TBC1D28Q2M2D7 210 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 CYBRD1Q53TN4 286 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 ARMC4Q5T2S8 1044 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 PCYOX1LQ8NBM8 494 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 RBM15BQ8NDT2 890 aaKnown RBP14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 MOSPD2Q8NHP6 518 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 FGFR1OP2Q9NVK5 253 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 GID8Q9NWU2 228 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 TMEFF2Q9UIK5 374 aaPredicted RBP14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 GPR160Q9UJ42 338 aa14.2□□□□□ -0.14
CCDC28B-204ENST00000469003 IGLV3-9A0A075B6K5 115 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 IQCMA0A1B0GVH7 501 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 NCR1O76036 304 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 MMP7P09237 267 aaPredicted RBP14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 ZNF250P15622 560 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 KDELR2P33947 212 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 DVL1P1P54792 670 aaPredicted RBP14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 TMEM33P57088 247 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 KLF3P57682 345 aaPredicted RBP14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 MRPS34P82930 218 aaKnown RBP14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 NKPD1Q17RQ9 610 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 LRRC23Q53EV4 343 aaPredicted RBP14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 CGB2Q6NT52 195 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 LRRC18Q8N456 261 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 ZNF519Q8TB69 540 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 SYNPRQ8TBG9 265 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 YIPF5Q969M3 257 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 BCL2L14Q9BZR8 327 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 LRMDAQ9H2I8 198 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 SIAEQ9HAT2 523 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 SMURF2Q9HAU4 748 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 TAAR3PQ9P1P4 343 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 SVEP1Q4LDE5 3571 aa14.19□□□□□ -0.14
CCDC28B-204ENST00000469003 LOC100653049A0A140TA62 436 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 HTR3EA5X5Y0 456 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 B4DSR2 109 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 KRT34O76011 436 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 CLPTM1O96005 669 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 LCKP06239 509 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 PCMT1P22061 227 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 RAD52P43351 418 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 UCP2P55851 309 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 HSF2Q03933 536 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 ST3GAL3Q11203 375 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 LAPTM4AQ15012 233 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 TAF11Q15544 211 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 ALKBH6Q3KRA9 238 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 MICU2Q8IYU8 434 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 OR2T12Q8NG77 320 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 CLDND2Q8NHS1 167 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 C11orf40Q8WZ69 217 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 HDAC2Q92769 488 aaKnown RBP14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 NMD3Q96D46 503 aaKnown RBP14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 TPD52L3Q96J77 140 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms