RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 VRK3Q8IV63 474 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 PRSS35Q8N3Z0 413 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 CPNE4Q96A23 557 aaPredicted RBP18.11■□□□□ 0.49
SHANK1-203ENST00000391813 BCL2L10Q9HD36 194 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 LY75O60449 1722 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 GFYI3L273 518 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 NFYBP25208 207 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 PSMB5P28074 263 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 POLR2HP52434 150 aaKnown RBP18.11■□□□□ 0.49
SHANK1-203ENST00000391813 F2RL1P55085 397 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 NR0B2Q15466 257 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 OR8D4Q8NGM9 314 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 SLC22A12Q96S37 553 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 FLVCR2Q9UPI3 526 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 ARAP2Q8WZ64 1704 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 LAMB1P07942 1786 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 TRAV1-2A0A0B4J238 106 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 BCL2L11O43521 198 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 HBG1P69891 147 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 HBG2P69892 147 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 MFSD12Q6NUT3 480 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 SLC48A1Q6P1K1 146 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 DPPA2Q7Z7J5 298 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 NKAIN4Q8IVV8 208 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 RCBTB1Q8NDN9 531 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 MRPS28Q9Y2Q9 187 aaKnown RBP18.1■□□□□ 0.49
SHANK1-203ENST00000391813 NUDT21O43809 227 aaKnown RBP18.1■□□□□ 0.49
SHANK1-203ENST00000391813 C1QAP02745 245 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 SNU13P55769 128 aaKnown RBP18.1■□□□□ 0.49
SHANK1-203ENST00000391813 SPACA1Q9HBV2 294 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 TAAR2Q9P1P5 351 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 STRAPQ9Y3F4 350 aaKnown RBP18.1■□□□□ 0.49
SHANK1-203ENST00000391813 C17orf105B2RV13 164 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 UMAD1C9J7I0 102 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 CCSO14618 274 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 SERPINA2P20848 420 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 ZNF511Q8NB15 262 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 FTCDNL1E5RQL4 147 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 GLYR1Q49A26 553 aaPredicted RBP18.1■□□□□ 0.49
SHANK1-203ENST00000391813 SLC35D2Q76EJ3 337 aa18.1■□□□□ 0.49
SHANK1-203ENST00000391813 PAPOLGQ9BWT3 736 aaKnown RBP18.1■□□□□ 0.49
SHANK1-203ENST00000391813 PATZ1Q9HBE1 687 aaKnown RBP18.1■□□□□ 0.49
SHANK1-203ENST00000391813 KDM4EB2RXH2 506 aaPredicted RBP18.09■□□□□ 0.49
SHANK1-203ENST00000391813 H7C1Q1 480 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 HMGN4O00479 90 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 CTGFP29279 349 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 ZNF239Q16600 458 aaKnown RBP18.09■□□□□ 0.49
SHANK1-203ENST00000391813 OR9A4Q8NGU2 314 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 SLC6A17Q9H1V8 727 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 CHRDQ9H2X0 955 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 C1orf198Q9H425 327 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 SRPK3Q9UPE1 567 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 CCL26Q9Y258 94 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 A0A0J9YY10 115 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 SLC5A10A0PJK1 596 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 ASPDHA6ND91 283 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 ZNF587BE7ETH6 402 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 F10P00742 488 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 MSMO1Q15800 293 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 MEP1BQ16820 701 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 LIPNQ5VXI9 398 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 GALNT16Q8N428 558 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 IL17RCQ8NAC3 791 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 RLN3Q8WXF3 142 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 ZNF264O43296 627 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 RPS18P62269 152 aaKnown RBP18.09■□□□□ 0.49
SHANK1-203ENST00000391813 CDK5R1Q15078 307 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 GLDNQ6ZMI3 551 aaPredicted RBP18.09■□□□□ 0.49
SHANK1-203ENST00000391813 RHOUQ7L0Q8 258 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 LGI3Q8N145 548 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 RSPRY1Q96DX4 576 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 METTL9Q9H1A3 318 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 TP53TG5Q9Y2B4 290 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 SYNGR4O95473 234 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 HLA-HP01893 362 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 KLKB1P03952 638 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 THBS1P07996 1170 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 SRFP11831 508 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 ZNF77Q15935 545 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 C12orf73Q69YU5 71 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 HSD17B13Q7Z5P4 300 aaPredicted RBP18.09■□□□□ 0.49
SHANK1-203ENST00000391813 WDR5BQ86VZ2 330 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 RBM24Q9BX46 236 aaKnown RBP18.09■□□□□ 0.49
SHANK1-203ENST00000391813 HDAC8Q9BY41 377 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 GAR1Q9NY12 217 aaKnown RBP18.09■□□□□ 0.49
SHANK1-203ENST00000391813 PLEKHM1Q9Y4G2 1056 aa18.09■□□□□ 0.49
SHANK1-203ENST00000391813 BHLHE40O14503 412 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 DSCR3O14972 297 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 OR4E1P0C645 316 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 TBPP20226 339 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 PTAFRP25105 342 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 CRYBB2P43320 205 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 FASLGP48023 281 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 PLPP6Q8IY26 295 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 OR1J1Q8NGS3 322 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 CXCL16Q9H2A7 254 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 PLEK2Q9NYT0 353 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 PCDHGA5Q9Y5G8 931 aa18.08■□□□□ 0.49
SHANK1-203ENST00000391813 VSTM5A8MXK1 200 aa18.08■□□□□ 0.48
SHANK1-203ENST00000391813 PLPP1O14494 284 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms