RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SLITRK4Q8IW52 837 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 GPALPP1Q8IXQ4 340 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 OR6V1Q8N148 313 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 OR5D18Q8NGL1 313 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ADAMTS18Q8TE60 1221 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 NPAS1Q99742 590 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ZNF471Q9BX82 626 aaPredicted RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 GSX2Q9BZM3 304 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 TGIF2Q9GZN2 237 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ELOVL3Q9HB03 270 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 IL23AQ9NPF7 189 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 MRPS18AQ9NVS2 196 aaKnown RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 HPF1Q9NWY4 346 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 B3GNT2Q9NY97 397 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ASH2LQ9UBL3 628 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 GRHPRQ9UBQ7 328 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 B9D1Q9UPM9 204 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 VDAC3Q9Y277 283 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 TMEM184BQ9Y519 407 aaPredicted RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 ICE1Q9Y2F5 2266 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 A0A0B4J2E0 115 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 A0A1B0GX12 115 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 RPS10-NUDT3A0A1W2PQS6 291 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 TCRBV21S2A2A0A5A6 115 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 AMY2AP04746 511 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 IL11P20809 199 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 NFYAP23511 347 aaPredicted RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 AKR1C3P42330 323 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 CARD17Q5XLA6 110 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 HAGHLQ6PII5 290 aaPredicted RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 CAMKVQ8NCB2 501 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 GPR137Q96N19 417 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 SERINC2Q96SA4 455 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 IER2Q9BTL4 223 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 C1QTNF7Q9BXJ2 289 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 KIR3DX1Q9H7L2 352 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 NIT2Q9NQR4 276 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 PHF11Q9UIL8 331 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 PILRAQ9UKJ1 303 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 NOP16Q9Y3C1 178 aaKnown RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 MEIKINA0A087WXM9 373 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 PDCD5O14737 125 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 BRINP1O60477 761 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 RBBP9O75884 186 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 C5AR1P21730 350 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 AVPR2P30518 371 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 MNDAP41218 407 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 FBXW4P57775 412 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 VWA2Q5GFL6 755 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 GPR139Q6DWJ6 353 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 Q6ZS52 159 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 RNF144BQ7Z419 303 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 NPEPL1Q8NDH3 523 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 SMIM4Q8WVI0 70 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 DGAT2Q96PD7 388 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 SORCS2Q96PQ0 1159 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 PFDN5Q99471 154 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 HDAC8Q9BY41 377 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 LYARQ9NX58 379 aaKnown RBP7.86□□□□□ -1.15
USP40-203ENST00000427112 MRM2Q9UI43 246 aaKnown RBP7.86□□□□□ -1.15
USP40-203ENST00000427112 SCP2D1Q9UJQ7 156 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 RPH3AQ9Y2J0 694 aaPredicted RBP7.86□□□□□ -1.15
USP40-203ENST00000427112 EML5Q05BV3 1969 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 G3V3Q6 166 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 J3QRE1 110 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 ECDO95905 644 aaPredicted RBP7.86□□□□□ -1.15
USP40-203ENST00000427112 TACR3P29371 465 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 CAPZA1P52907 286 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 PITPNAQ00169 270 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 HHEXQ03014 270 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 BAMBIQ13145 260 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 MOGAT2Q3SYC2 334 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 CD276Q5ZPR3 534 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 CYB5R2Q6BCY4 276 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 PWWP2BQ6NUJ5 590 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 ARHGAP11AQ6P4F7 1023 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 TMEM92Q6UXU6 159 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 GJD3Q8N144 294 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 CA13Q8N1Q1 262 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 ZNF454Q8N9F8 522 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 IL17RCQ8NAC3 791 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 ROBO4Q8WZ75 1007 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 ANKRD9Q96BM1 317 aaPredicted RBP7.86□□□□□ -1.15
USP40-203ENST00000427112 ZC3HAV1LQ96H79 300 aaKnown RBP7.86□□□□□ -1.15
USP40-203ENST00000427112 AHCYL2Q96HN2 611 aaKnown RBP7.86□□□□□ -1.15
USP40-203ENST00000427112 MFFQ9GZY8 342 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 EMC7Q9NPA0 242 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 ZNF281Q9Y2X9 895 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 UBE2QL1A1L167 161 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 K7EQS6 105 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 PTP4A3O75365 173 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 LYPD3O95274 346 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 TXNDC12O95881 172 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 SULT1A3P0DMM9 295 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 SULT1A4P0DMN0 295 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 HLA-DOBP13765 273 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 PRKXP51817 358 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 NR0B1P51843 470 aaKnown RBP7.86□□□□□ -1.15
USP40-203ENST00000427112 LUMP51884 338 aaPredicted RBP7.86□□□□□ -1.15
USP40-203ENST00000427112 SLC25A30Q5SVS4 291 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms