RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MAP6Q96JE9 813 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 THAP7Q9BT49 309 aaPredicted RBP14.72□□□□□ -0.05
COL4A1-204ENST00000543140 RNF121Q9H920 327 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 NLKQ9UBE8 527 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 A0A0B4J293 547 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 EEF1E1O43324 174 aaKnown RBP14.72□□□□□ -0.05
COL4A1-204ENST00000543140 ABHD16AO95870 558 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 ZNF28P17035 718 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 ALOX5APP20292 161 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 RBMS1P29558 406 aaKnown RBP14.72□□□□□ -0.05
COL4A1-204ENST00000543140 INSM1Q01101 510 aaPredicted RBP14.72□□□□□ -0.05
COL4A1-204ENST00000543140 HES5Q5TA89 166 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 MZT2BQ6NZ67 158 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 MAML2Q8IZL2 1156 aaPredicted RBP14.72□□□□□ -0.05
COL4A1-204ENST00000543140 OR5AK2Q8NH90 309 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 ZNF671Q8TAW3 534 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 UBASH3BQ8TF42 649 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 HGDQ93099 445 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 KCNJ15Q99712 375 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 PRMT8Q9NR22 394 aaPredicted RBP14.72□□□□□ -0.05
COL4A1-204ENST00000543140 RBFOX1Q9NWB1 397 aaKnown RBP14.72□□□□□ -0.05
COL4A1-204ENST00000543140 TEKT2Q9UIF3 430 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 B9D1Q9UPM9 204 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 EML6Q6ZMW3 1958 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 FAM240BA0A1B0GVZ2 78 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 ZNF593O00488 134 aaPredicted RBP14.71□□□□□ -0.05
COL4A1-204ENST00000543140 CD1AP06126 327 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 NR4A2P43354 598 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 OR7A5Q15622 319 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 KCNJ8Q15842 424 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 LPAL2Q16609 132 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 YIF1BQ5BJH7 314 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 PLET1Q6UQ28 207 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 NCCRP1Q6ZVX7 275 aaPredicted RBP14.71□□□□□ -0.05
COL4A1-204ENST00000543140 KCTD20Q7Z5Y7 419 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 MISPQ8IVT2 679 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 ZNF519Q8TB69 540 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 RPS4Y2Q8TD47 263 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 FRMD6Q96NE9 622 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 GFI1Q99684 422 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 GTPBP2Q9BX10 602 aaKnown RBP14.71□□□□□ -0.05
COL4A1-204ENST00000543140 TXNIPQ9H3M7 391 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 ANKUB1A6NFN9 424 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 CTLA4P16410 223 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 ALKBH1Q13686 389 aaKnown RBP14.71□□□□□ -0.05
COL4A1-204ENST00000543140 INPP5JQ15735 1006 aaPredicted RBP14.71□□□□□ -0.05
COL4A1-204ENST00000543140 MEP1BQ16820 701 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 OR10G3Q8NGC4 313 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 OR6F1Q8NGZ6 308 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 CHAC2Q8WUX2 184 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 NSMAFQ92636 917 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 ZFP3Q96NJ6 502 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 ULBP3Q9BZM4 244 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 SLCO1C1Q9NYB5 712 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 MYOTQ9UBF9 498 aa14.71□□□□□ -0.05
COL4A1-204ENST00000543140 PPIEQ9UNP9 301 aaKnown RBP14.71□□□□□ -0.05
COL4A1-204ENST00000543140 H3BML4 177 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 OPN1LWP04000 364 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 FOXF1Q12946 379 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 TRIM61Q5EBN2 209 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 LRRN1Q6UXK5 716 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 OR5L2Q8NGL0 311 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 LGALS14Q8TCE9 139 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 STK35Q8TDR2 534 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 RFT1Q96AA3 541 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 SMOC1Q9H4F8 434 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 FTCDNL1E5RQL4 147 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 OR2T1O43869 369 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 SPARCP09486 303 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 CCKBRP32239 447 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 CLDN12P56749 244 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 ZXDAP98168 799 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 SF3A2Q15428 464 aaKnown RBP14.7□□□□□ -0.06
COL4A1-204ENST00000543140 MTFR2Q6P444 385 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 IZUMO1Q8IYV9 350 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 OR10AC1Q8NH08 325 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 NXPE2Q96DL1 559 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 ZCCHC4Q9H5U6 513 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 NPAP1Q9NZP6 1156 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 PPP4R1LQ9P1A2 415 aa14.7□□□□□ -0.06
COL4A1-204ENST00000543140 TEX51A0A1B0GUA7 166 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 TRIM3O75382 744 aaPredicted RBP14.69□□□□□ -0.06
COL4A1-204ENST00000543140 ZFAND5O76080 213 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 CCL4P13236 92 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 SRP9P49458 86 aaKnown RBP14.69□□□□□ -0.06
COL4A1-204ENST00000543140 ATAD3CQ5T2N8 411 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 KRT74Q7RTS7 529 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 OR51A4Q8NGJ6 313 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 OR2G2Q8NGZ5 317 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 OTOSQ8NHW6 89 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 ST8SIA1Q92185 356 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 METTL7AQ9H8H3 244 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 MRPL22Q9NWU5 206 aaKnown RBP14.69□□□□□ -0.06
COL4A1-204ENST00000543140 ANKRD10Q9NXR5 420 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 MRPL39Q9NYK5 338 aaKnown RBP14.69□□□□□ -0.06
COL4A1-204ENST00000543140 ABRACLQ9P1F3 81 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 NUFIP1Q9UHK0 495 aaKnown RBP14.69□□□□□ -0.06
COL4A1-204ENST00000543140 TECTAO75443 2155 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.69□□□□□ -0.06
COL4A1-204ENST00000543140 SLC22A23A1A5C7 686 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms