RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 CCL17Q92583 94 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 TMEM19Q96HH6 336 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 MMP26Q9NRE1 261 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 NKIRAS2Q9NYR9 191 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 CALML5Q9NZT1 146 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 NUP50Q9UKX7 468 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 TRAV36DV7A0A075B6V5 113 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 A0A087WUJ7 227 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 WDR91A4D1P6 747 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 MAKP20794 623 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 MDKP21741 143 aaPredicted RBP17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 DSTNP60981 165 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 SRSF4Q08170 494 aaKnown RBP17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 ARMCX4Q5H9R4 360 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 KLF17Q5JT82 389 aaPredicted RBP17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 NHLRC1Q6VVB1 395 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 NUDCD3Q8IVD9 361 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 DEFB108BQ8NET1 73 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 PKNOX2Q96KN3 472 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 NUF2Q9BZD4 464 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 C20orf27Q9GZN8 174 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 ARMC7Q9H6L4 198 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 SAP30LQ9HAJ7 183 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 SLCO1C1Q9NYB5 712 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 KLHL14Q9P2G3 628 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 LEF1Q9UJU2 399 aaPredicted RBP17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 FBXL3Q9UKT7 428 aa17.24■□□□□ 0.35
SQSTM1-215ENST00000514093 NOTCH1P46531 2555 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 ALDOCP09972 364 aaKnown RBP17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 OR8G3PP0DMU2 310 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 OMGP23515 440 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 HTR2AP28223 471 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 C6orf89Q6UWU4 347 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 WDR88Q6ZMY6 472 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 NET1Q7Z628 596 aaPredicted RBP17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 ADPRHL1Q8NDY3 354 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 ZNF519Q8TB69 540 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 C11orf40Q8WZ69 217 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 GPA33Q99795 319 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 SH3GL3Q99963 347 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 SLITRK2Q9H156 845 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 CACYBPQ9HB71 228 aaKnown RBP17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 CDH20Q9HBT6 801 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 IFT52Q9Y366 437 aa17.23■□□□□ 0.35
SQSTM1-215ENST00000514093 A0A0G2JPF8 293 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 A0A1B0GWA3 101 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 SLC22A23A1A5C7 686 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 HNRNPCL2B2RXH8 293 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 HNRNPCL3B7ZW38 293 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 LRRN3E7EW58 273 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 RFXANKO14593 260 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 SPRY3O43610 288 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 HNRNPCL1O60812 293 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 RNASE1P07998 156 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 MYZAPP0CAP1 466 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 HNRNPCL4P0DMR1 293 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 AHCYP23526 432 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 RBMXP38159 391 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 CSNK1A1P48729 337 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 PMS2P3Q13401 168 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 SLC9A3R2Q15599 337 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 SNX32Q86XE0 403 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 SLC22A24Q8N4F4 322 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 GLB1L3Q8NCI6 653 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 ST7LQ8TDW4 575 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 POP5Q969H6 163 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 SLC25A28Q96A46 364 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 SLC41A3Q96GZ6 507 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 RSPO3Q9BXY4 272 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 ZMAT3Q9HA38 289 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 PLEK2Q9NYT0 353 aa17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 SOX21Q9Y651 276 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-215ENST00000514093 DRD4P21917 467 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 PCGF2P35227 344 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 ATP4BP51164 291 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 UCP2P55851 309 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 ABCE1P61221 599 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 GTDC1Q4AE62 458 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 ALG10BQ5I7T1 473 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 PIWIL3Q7Z3Z3 882 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 JAZF1Q86VZ6 243 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 ELMOD3Q96FG2 381 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 MOGAT1Q96PD6 335 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 RNF121Q9H920 327 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 C12orf10Q9HB07 376 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 ARMCX1Q9P291 453 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 PURGQ9UJV8 347 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 AUP1Q9Y679 476 aa17.21■□□□□ 0.35
SQSTM1-215ENST00000514093 TRAPPC2LH3BP13 241 aa17.2■□□□□ 0.34
SQSTM1-215ENST00000514093 BGLAPP02818 100 aa17.2■□□□□ 0.34
SQSTM1-215ENST00000514093 NUDT7P0C024 238 aa17.2■□□□□ 0.34
SQSTM1-215ENST00000514093 ETV4P43268 484 aa17.2■□□□□ 0.34
SQSTM1-215ENST00000514093 RPL14P50914 215 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-215ENST00000514093 ZNF81P51508 661 aa17.2■□□□□ 0.34
SQSTM1-215ENST00000514093 BIDP55957 195 aa17.2■□□□□ 0.34
SQSTM1-215ENST00000514093 PUDPQ08623 228 aa17.2■□□□□ 0.34
SQSTM1-215ENST00000514093 C5orf46Q6UWT4 87 aa17.2■□□□□ 0.34
SQSTM1-215ENST00000514093 COMTD1Q86VU5 262 aa17.2■□□□□ 0.34
SQSTM1-215ENST00000514093 C10orf53Q8N6V4 93 aa17.2■□□□□ 0.34
SQSTM1-215ENST00000514093 MAL2Q969L2 176 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms