RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 AGFG1P52594 562 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 SLC37A1P57057 533 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 SLC26A5P58743 744 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 TAS2R41P59536 307 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 MGAT2Q10469 447 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 SNTB2Q13425 540 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 CDCP2Q5VXM1 449 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 CORO6Q6QEF8 472 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 NDUFAF7Q7L592 441 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 MARCH3Q86UD3 253 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 OR1N1Q8NGS0 311 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 BRIX1Q8TDN6 353 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 UFD1Q92890 307 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 WDR89Q96FK6 387 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 HRASLS5Q96KN8 279 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 WFDC6Q9BQY6 131 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 CHRNA10Q9GZZ6 450 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 TMEM185BQ9H7F4 350 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 VDAC3Q9Y277 283 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 A0A1B0GV50 99 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 FAM183AA6NL82 134 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 E9PI62 339 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 SCDO00767 359 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ARPC1BO15143 372 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 IFNW1P05000 195 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 PCGF2P35227 344 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 CD79BP40259 229 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 CEBPGP53567 150 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF91Q05481 1191 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 RAB12Q6IQ22 244 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 TMPRSS7Q7RTY8 843 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 BCORP1Q8N888 145 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 CLRN3Q8NCR9 226 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 OR4F15Q8NGB8 312 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 THAP6Q8TBB0 222 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 NKD1Q969G9 470 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 MOAP1Q96BY2 351 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 FAM122AQ96E09 287 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 LCORQ96JN0 433 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 PELOQ9BRX2 385 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 WWTR1Q9GZV5 400 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 NXT1Q9UKK6 140 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 CLDN16Q9Y5I7 305 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF407Q9C0G0 2248 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ICOSLGO75144 302 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ITGA10O75578 1167 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ZFAND5O76080 213 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 SLC34A2O95436 690 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 IGKV1D-16P01601 117 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 H2AFB2P0C5Z0 115 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 PRG2P13727 222 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 GABRB1P18505 474 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ELK1P19419 428 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 G0S2P27469 103 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 MRPL19P49406 292 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 SELENOPP49908 381 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 C21orf58P58505 322 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 FUT5Q11128 374 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 INPP5JQ15735 1006 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 GFOD2Q3B7J2 385 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 PDZD11Q5EBL8 140 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 MRPL2Q5T653 305 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 MZT2AQ6P582 158 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 PDZD9Q8IXQ8 264 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ZSCAN1Q8NBB4 408 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 CLEC1AQ8NC01 280 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 GOT1L1Q8NHS2 421 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 TRMT10AQ8TBZ6 339 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 TEX47Q8TBZ9 253 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 SFXN5Q8TD22 340 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF721Q8TF20 911 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 CNOT9Q92600 299 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ORAI1Q96D31 301 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ZPBPQ9BS86 351 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF471Q9BX82 626 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 SLC38A1Q9H2H9 487 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 KCND3Q9UK17 655 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 GPR55Q9Y2T6 319 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 DOCK10Q96BY6 2186 aa7.89□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF670-ZNF695F2Z2N8 137 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 RP2O75695 350 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 CT45A8P0DMV1 189 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 CT45A9P0DMV2 189 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 MMP11P24347 488 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 MEOX2P50222 304 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 OR10A3P58181 314 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 LSM11P83369 360 aaKnown RBP eCLIP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 EBPQ15125 230 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 CT45A2Q5DJT8 189 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF385CQ66K41 422 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 MRPL14Q6P1L8 145 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 NHLRC1Q6VVB1 395 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 TMED4Q7Z7H5 227 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 C12orf45Q8N5I9 185 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 OR5M1Q8NGP8 315 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 DUSP19Q8WTR2 217 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 SPATA5L1Q9BVQ7 753 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 FNDC11Q9BVV2 318 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 SEMA4CQ9C0C4 833 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF436Q9C0F3 470 aaPredicted RBP7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms