RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 NPIPB13A6NJU9 1138 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 NPIPB4C9JG80 1138 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 AKAP8O43823 692 aaKnown RBP17.18■□□□□ 0.34
USP39-218ENST00000493829 SS18L1O75177 396 aaPredicted RBP17.18■□□□□ 0.34
USP39-218ENST00000493829 IGHG1P01857 330 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 GYPBP06028 91 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 GLI4P10075 376 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 CLUP10909 449 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 CASP6P55212 293 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 IL18R1Q13478 541 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 ZNF362Q5T0B9 420 aaPredicted RBP17.18■□□□□ 0.34
USP39-218ENST00000493829 FAM205BPQ63HN1 556 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 CXXC5Q7LFL8 322 aaKnown RBP17.18■□□□□ 0.34
USP39-218ENST00000493829 ADCK1Q86TW2 530 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 CPOQ8IVL8 374 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 MARVELD2Q8N4S9 558 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 NAXEQ8NCW5 288 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 OR6X1Q8NH79 312 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 MBD3L2Q8NHZ7 208 aaPredicted RBP17.18■□□□□ 0.34
USP39-218ENST00000493829 ZNF566Q969W8 418 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 SLC25A44Q96H78 314 aaPredicted RBP17.18■□□□□ 0.34
USP39-218ENST00000493829 TSSK2Q96PF2 358 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 TTYH2Q9BSA4 534 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 ARHGAP21Q5T5U3 1957 aa17.18■□□□□ 0.34
USP39-218ENST00000493829 PRSS37A4D1T9 235 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 ZNF724A8MTY0 619 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 MRPL33O75394 65 aaKnown RBP17.17■□□□□ 0.34
USP39-218ENST00000493829 RENP00797 406 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 PGA4P0DJD7 388 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 PGA3P0DJD8 388 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 MYF6P23409 242 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 PMPCAQ10713 525 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 ITGADQ13349 1161 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 MAD2L1BPQ15013 274 aaPredicted RBP17.17■□□□□ 0.34
USP39-218ENST00000493829 HDDC2Q7Z4H3 204 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 MED12LQ86YW9 2145 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 TMEM123Q8N131 208 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 ZNF843Q8N446 348 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 NPEPL1Q8NDH3 523 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 OR6N1Q8NGY5 312 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 LRR1Q96L50 414 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 ADAD1Q96M93 576 aaKnown RBP17.17■□□□□ 0.34
USP39-218ENST00000493829 DOCK7Q96N67 2140 aa17.17■□□□□ 0.34
USP39-218ENST00000493829 FAM171A2A8MVW0 826 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 PRR23D1E9PI22 279 aaPredicted RBP17.16■□□□□ 0.34
USP39-218ENST00000493829 M0R3G1 203 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 C1QL1O75973 258 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 PRR23D2P0DMB1 279 aaPredicted RBP17.16■□□□□ 0.34
USP39-218ENST00000493829 TMIGD3P0DMS9 266 aaPredicted RBP17.16■□□□□ 0.34
USP39-218ENST00000493829 PAICSP22234 425 aaKnown RBP17.16■□□□□ 0.34
USP39-218ENST00000493829 UQCRFS1P47985 274 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 CSNK1A1P48729 337 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 PHYHD1Q5SRE7 291 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 OR2A2Q6IF42 318 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 KRT80Q6KB66 452 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 VWA1Q6PCB0 445 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 THAP5Q7Z6K1 395 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 OR51L1Q8NGJ5 315 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 OR8J1Q8NGP2 316 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 APH1BQ8WW43 257 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 TMEM45BQ96B21 275 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 FOXN4Q96NZ1 517 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 ALKBH3Q96Q83 286 aaPredicted RBP17.16■□□□□ 0.34
USP39-218ENST00000493829 KCNK17Q96T54 332 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 RCE1Q9Y256 329 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 EMC9Q9Y3B6 208 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 CFAP46Q8IYW2 2715 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 SMG1Q96Q15 3661 aaKnown RBP17.16■□□□□ 0.34
USP39-218ENST00000493829 SLC22A23A1A5C7 686 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 SLC43A1O75387 559 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 ZNF432O94892 652 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 IL2RAP01589 272 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 HOXD4P09016 255 aaPredicted RBP17.16■□□□□ 0.34
USP39-218ENST00000493829 FMO3P31513 532 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 NUDT6P53370 316 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 ISL1P61371 349 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 KLHL12Q53G59 568 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 SOWAHCQ53LP3 525 aaPredicted RBP17.16■□□□□ 0.34
USP39-218ENST00000493829 FAM214BQ7L5A3 538 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 ZNF100Q8IYN0 542 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 NSMAFQ92636 917 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 APH1AQ96BI3 265 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 OR51V1Q9H2C8 321 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 GLRX2Q9NS18 164 aa17.16■□□□□ 0.34
USP39-218ENST00000493829 EIF4E1BA6NMX2 242 aaKnown RBP17.15■□□□□ 0.34
USP39-218ENST00000493829 B8ZZF3 427 aa17.15■□□□□ 0.34
USP39-218ENST00000493829 DENRO43583 198 aaKnown RBP17.15■□□□□ 0.34
USP39-218ENST00000493829 UPK3AO75631 287 aa17.15■□□□□ 0.34
USP39-218ENST00000493829 GABRB1P18505 474 aa17.15■□□□□ 0.34
USP39-218ENST00000493829 GNLYP22749 145 aa17.15■□□□□ 0.34
USP39-218ENST00000493829 PYCR1P32322 319 aa17.15■□□□□ 0.34
USP39-218ENST00000493829 CA7P43166 264 aa17.15■□□□□ 0.34
USP39-218ENST00000493829 RPS7P62081 194 aaKnown RBP17.15■□□□□ 0.34
USP39-218ENST00000493829 SMN1Q16637 294 aaKnown RBP17.15■□□□□ 0.34
USP39-218ENST00000493829 MRPL13Q9BYD1 178 aaKnown RBP17.15■□□□□ 0.34
USP39-218ENST00000493829 NUAK2Q9H093 628 aa17.15■□□□□ 0.34
USP39-218ENST00000493829 SRA1Q9HD15 236 aaKnown RBP17.15■□□□□ 0.34
USP39-218ENST00000493829 ASB6Q9NWX5 421 aa17.15■□□□□ 0.34
USP39-218ENST00000493829 UBAP1Q9NZ09 502 aa17.15■□□□□ 0.34
USP39-218ENST00000493829 LRRC42Q9Y546 428 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms