RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 KDM4EB2RXH2 506 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 WNT9BO14905 357 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 HLA-DQB2P05538 268 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 NID1P14543 1247 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TSPOP30536 169 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 KIR2DS4P43632 304 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 NPBWR1P48145 328 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PRLHRP49683 370 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 MXD1Q05195 221 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 KIR2DS1Q14954 304 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 OR4A47Q6IF82 309 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 CDH26Q8IXH8 852 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 OR2I1PQ8NGU4 316 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 SMAP2Q8WU79 429 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 TNFAIP8L1Q8WVP5 186 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 FCAMRQ8WWV6 532 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ASB17Q8WXJ9 295 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 KREMEN1Q96MU8 473 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 IL17FQ96PD4 163 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 CCDC28BQ9BUN5 200 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 SLCO5A1Q9H2Y9 848 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TRAV36DV7A0A075B6V5 113 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 OR6C6A6NF89 314 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 KLF11O14901 512 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PRAMEF4O60810 478 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PRAF2O60831 178 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ARHGEF15O94989 841 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 HOXD9P28356 352 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 RPL7AP62424 266 aaKnown RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 GNB1P62873 340 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ERVK-25P63136 954 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 DPTQ07507 201 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 C2orf54Q08AI8 447 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TBR1Q16650 682 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 DDI2Q5TDH0 399 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 GJB7Q6PEY0 223 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PCSK4Q6UW60 755 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TMEM182Q6ZP80 229 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 APLFQ8IW19 511 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 ZBTB34Q8NCN2 500 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 KNL1Q8NG31 2342 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 OR6S1Q8NH40 331 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 DNASE2BQ8WZ79 361 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 SNX22Q96L94 193 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 F2RL3Q96RI0 385 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 EBPLQ9BY08 206 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 MTG2Q9H4K7 406 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ANKRD19PQ9H560 264 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PATZ1Q9HBE1 687 aaKnown RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 CCDC167Q9P0B6 97 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 RNF6Q9Y252 685 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 A0A1B0GTH9 108 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 AQP7P3A6NL99 342 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 PTGESO14684 152 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 NIPSNAP2O75323 286 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 GPANK1O95872 356 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 STATHP02808 62 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 UNGP13051 313 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 LIFP15018 202 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 AMY2BP19961 511 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 ALDH3B1P43353 468 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 POLR2JP52435 117 aaKnown RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 HADHBP55084 474 aaKnown RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 PYCR3Q53H96 274 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 ZNF425Q6IV72 752 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 Q6ZPB1 254 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 OR2W3Q7Z3T1 314 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 TMEM135Q86UB9 458 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 BEST3Q8N1M1 668 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 KIF2BQ8N4N8 673 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 CLDN19Q8N6F1 224 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 OR52R1Q8NGF1 315 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 OR5D14Q8NGL3 314 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 OR13C4Q8NGS5 318 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 OR2T11Q8NH01 316 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 TM4SF19Q96DZ7 209 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 SLC41A2Q96JW4 573 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 WACQ9BTA9 647 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 ATG5Q9H1Y0 275 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 CA10Q9NS85 328 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 VNN3Q9NY84 501 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 SLC17A6Q9P2U8 582 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 EXOSC1Q9Y3B2 195 aaKnown RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 PCDHA9Q9Y5H5 950 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 KLF2Q9Y5W3 355 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 A0A0D9SEW6 157 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 PSMG1O95456 288 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 BCHEP06276 602 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 CDK1P06493 297 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 INHBBP09529 407 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 COX7A1P24310 79 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 CA5AP35218 305 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 PRKCIP41743 596 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 PPICP45877 212 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 HOXA1P49639 335 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 RAB7AP51149 207 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 TBCEQ15813 527 aaPredicted RBP3.73□□□□□ -1.81
USH2A-202ENST00000366942 Q56UQ5 140 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 TMEM92Q6UXU6 159 aa3.73□□□□□ -1.81
USH2A-202ENST00000366942 ZNF517Q6ZMY9 492 aaPredicted RBP3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms