RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 PCDHGB7Q9Y5F8 929 aa16.6■□□□□ 0.25
CLN3-206ENST00000360019 A6NIZ1 184 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 FAM171A2A8MVW0 826 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 VAMP5O95183 116 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 ACTL6AO96019 429 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 IGHA1P01876 353 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 MRPL3P09001 348 aaKnown RBP16.59■□□□□ 0.25
CLN3-206ENST00000360019 PYCR1P32322 319 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 GP2P55259 537 aaKnown RBP16.59■□□□□ 0.25
CLN3-206ENST00000360019 RAP1BP61224 184 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 RAP1AP62834 184 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 LGALS3BPQ08380 585 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 C1DQ13901 141 aaKnown RBP16.59■□□□□ 0.25
CLN3-206ENST00000360019 DOC2BQ14184 412 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 GGTLC2Q14390 218 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 PON3Q15166 354 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 POU4F3Q15319 338 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 UBE2UQ5VVX9 321 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 RNLSQ5VYX0 342 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 VASNQ6EMK4 673 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 LYPD4Q6UWN0 246 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 C9orf43Q8TAL5 461 aaPredicted RBP16.59■□□□□ 0.25
CLN3-206ENST00000360019 RORBQ92753 470 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 KCNK17Q96T54 332 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 A0A087WV48 116 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 TRMUO75648 421 aaKnown RBP16.59■□□□□ 0.25
CLN3-206ENST00000360019 WISP2O76076 250 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 GLCEO94923 617 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 IGHG3P01860 377 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 SBK2P0C263 348 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 ATP6V1E1P36543 226 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 ETV1P50549 477 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 SLC17A1Q14916 467 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 BCL2A1Q16548 175 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 EEF1A1P5Q5VTE0 462 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 FAM205BPQ63HN1 556 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 SYT14Q8NB59 555 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 PROKR2Q8NFJ6 384 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 OR6K6Q8NGW6 343 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 OR2T4Q8NH00 348 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 SNRNP27Q8WVK2 155 aaKnown RBP16.59■□□□□ 0.25
CLN3-206ENST00000360019 ROBO4Q8WZ75 1007 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 CPNE4Q96A23 557 aaPredicted RBP16.59■□□□□ 0.25
CLN3-206ENST00000360019 ZNF649Q9BS31 505 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 ALG12Q9BV10 488 aa16.59■□□□□ 0.25
CLN3-206ENST00000360019 ZNF99A8MXY4 864 aaPredicted RBP16.58■□□□□ 0.24
CLN3-206ENST00000360019 CTLA4P16410 223 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 CXADRP78310 365 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 C3AR1Q16581 482 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 PDSS1Q5T2R2 415 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 LCN1P1Q5VSP4 162 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 ABLIM2Q6H8Q1 611 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 UNQ6494/PRO21346Q6UXR6 183 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 CREB3L2Q70SY1 520 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 GPR141Q7Z602 305 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 ZBTB46Q86UZ6 589 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 MEIOBQ8N635 442 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 OR13F1Q8NGS4 319 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 SMAP2Q8WU79 429 aaPredicted RBP16.58■□□□□ 0.24
CLN3-206ENST00000360019 TUBA1CQ9BQE3 449 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 EXO5Q9H790 373 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 TP53TG5Q9Y2B4 290 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 FKBP7Q9Y680 259 aa16.58■□□□□ 0.24
CLN3-206ENST00000360019 SLC35F4A4IF30 521 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 SEC14L2O76054 403 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 LIMS3P0CW19 117 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 LIMS4P0CW20 117 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 SYT6Q5T7P8 510 aaPredicted RBP16.57■□□□□ 0.24
CLN3-206ENST00000360019 NANOGP1Q8N7R0 232 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 OR9K2Q8NGE7 335 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 OR6X1Q8NH79 312 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 ZNF385AQ96PM9 386 aaKnown RBP16.57■□□□□ 0.24
CLN3-206ENST00000360019 OR5M11Q96RB7 305 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 TIMP4Q99727 224 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 JAM3Q9BX67 310 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 MRPL13Q9BYD1 178 aaKnown RBP16.57■□□□□ 0.24
CLN3-206ENST00000360019 RBM38Q9H0Z9 239 aaKnown RBP16.57■□□□□ 0.24
CLN3-206ENST00000360019 TIGARQ9NQ88 270 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 LHX6Q9UPM6 363 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 B9D1Q9UPM9 204 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 MOKQ9UQ07 419 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 ERGIC3Q9Y282 383 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 B3GNT3Q9Y2A9 372 aa16.57■□□□□ 0.24
CLN3-206ENST00000360019 LSM2Q9Y333 95 aaKnown RBP16.57■□□□□ 0.24
CLN3-206ENST00000360019 IGLV1-36A0A0B4J1U3 117 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 ZNF716A6NP11 495 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 SLC16A7O60669 478 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 TFP02787 698 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 PGA4P0DJD7 388 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 PGA3P0DJD8 388 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 MYL12AP19105 171 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 FMODQ06828 376 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 ETFDHQ16134 617 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 SIAH3Q8IW03 269 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 ZIC4Q8N9L1 334 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 FCGR1BQ92637 280 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 SLC25A44Q96H78 314 aaPredicted RBP16.56■□□□□ 0.24
CLN3-206ENST00000360019 TBX5Q99593 518 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 SF3B5Q9BWJ5 86 aaKnown RBP16.56■□□□□ 0.24
CLN3-206ENST00000360019 RERGLQ9H628 205 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms