RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 OR2M3Q8NG83 312 aa20.33■□□□□ 0.84
CDX1-201ENST00000231656 NEIL3Q8TAT5 605 aa20.33■□□□□ 0.84
CDX1-201ENST00000231656 WDFY2Q96P53 400 aa20.33■□□□□ 0.84
CDX1-201ENST00000231656 TTTY10Q9BZA0 68 aa20.33■□□□□ 0.84
CDX1-201ENST00000231656 SACM1LQ9NTJ5 587 aa20.33■□□□□ 0.84
CDX1-201ENST00000231656 FAIMQ9NVQ4 179 aa20.33■□□□□ 0.84
CDX1-201ENST00000231656 FAM171A2A8MVW0 826 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 G3V3Y1 287 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 CALRP27797 417 aaKnown RBP20.32■□□□□ 0.84
CDX1-201ENST00000231656 APOBEC1P41238 236 aaKnown RBP20.32■□□□□ 0.84
CDX1-201ENST00000231656 CCL11P51671 97 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 HSF2Q03933 536 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 TRAM1Q15629 374 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 C11orf91Q3C1V1 193 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 SPANXN2Q5MJ10 180 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 SPINK14Q6IE38 97 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 RPTNQ6XPR3 784 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 FADS6Q8N9I5 356 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 PELI1Q96FA3 418 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 PGLYRP3Q96LB9 341 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 SIGLEC12Q96PQ1 595 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 SLC30A2Q9BRI3 323 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 ZNF552Q9H707 407 aaPredicted RBP20.32■□□□□ 0.84
CDX1-201ENST00000231656 INIPQ9NRY2 104 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 PLA2G3Q9NZ20 509 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 FBXL2Q9UKC9 423 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 SSUH2Q9Y2M2 353 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 GRIP1Q9Y3R0 1128 aa20.32■□□□□ 0.84
CDX1-201ENST00000231656 SLC35F4A4IF30 521 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 C11orf98E9PRG8 122 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 H7C1C5 153 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 DCTN6O00399 190 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 PLPP3O14495 311 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 MAGEB4O15481 346 aaPredicted RBP20.31■□□□□ 0.84
CDX1-201ENST00000231656 OGG1O15527 345 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 OR2T1O43869 369 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 NEURL1O76050 574 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 SNX4O95219 450 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 LCN6P62502 163 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 OXA1LQ15070 435 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 PLCZ1Q86YW0 608 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 CEP19Q96LK0 163 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 MRPL39Q9NYK5 338 aaKnown RBP20.31■□□□□ 0.84
CDX1-201ENST00000231656 DKK4Q9UBT3 224 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 DAPK2Q9UIK4 370 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 CMAHPQ9Y471 501 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 SMIM30A4D0T7 59 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 CASKO14936 926 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 RENP00797 406 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 PLA2G5P39877 138 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 CAV3P56539 151 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 SLC3A1Q07837 685 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 FOXF1Q12946 379 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 ZNF181Q2M3W8 571 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 SLC25A53Q5H9E4 307 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 LAX1Q8IWV1 398 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 ZNF511Q8NB15 262 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 OR2T4Q8NH00 348 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 ZNF519Q8TB69 540 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 KCNN2Q9H2S1 579 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 VDAC3Q9Y277 283 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 KCNMB2Q9Y691 235 aa20.31■□□□□ 0.84
CDX1-201ENST00000231656 URB1O60287 2271 aaKnown RBP20.31■□□□□ 0.84
CDX1-201ENST00000231656 SNPHO15079 494 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 RGS5O15539 181 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 TBX1O43435 398 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 IGHMP01871 453 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 OCM2P0CE71 109 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 OCMP0CE72 109 aaPredicted RBP20.3■□□□□ 0.84
CDX1-201ENST00000231656 EEF1A1P5Q5VTE0 462 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 SLC16A9Q7RTY1 509 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 LYSMD2Q8IV50 215 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 OR6V1Q8N148 313 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 OR4K17Q8NGC6 315 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 ZNF417Q8TAU3 575 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 SNX33Q8WV41 574 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 TMEM41AQ96HV5 264 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 ZNF587Q96SQ5 575 aaPredicted RBP20.3■□□□□ 0.84
CDX1-201ENST00000231656 MIXL1Q9H2W2 232 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 CCDC86Q9H6F5 360 aaKnown RBP20.3■□□□□ 0.84
CDX1-201ENST00000231656 SRA1Q9HD15 236 aaKnown RBP20.3■□□□□ 0.84
CDX1-201ENST00000231656 ABCB10Q9NRK6 738 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 UGT2A1Q9Y4X1 527 aa20.3■□□□□ 0.84
CDX1-201ENST00000231656 A0A0G2JMM0 328 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 A0A1W2PPB8 328 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 A0A1W2PRS3 328 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 KIR3DP1A8MWS1 328 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 LOC110117498-PIK3R3F6TDL0 507 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 CDK2AP1O14519 115 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 ZNF208O43345 1280 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 TRIM3O75382 744 aaPredicted RBP20.29■□□□□ 0.84
CDX1-201ENST00000231656 SC5DO75845 299 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 ACVR1BP36896 505 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 DNASE1L1P49184 302 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 ZNF41P51814 821 aaPredicted RBP20.29■□□□□ 0.84
CDX1-201ENST00000231656 GBX2P52951 348 aaPredicted RBP20.29■□□□□ 0.84
CDX1-201ENST00000231656 RPL27P61353 136 aaKnown RBP20.29■□□□□ 0.84
CDX1-201ENST00000231656 MFAP5Q13361 173 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 OR1C1Q15619 314 aa20.29■□□□□ 0.84
CDX1-201ENST00000231656 ACKR1Q16570 336 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms