RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ARSKQ6UWY0 536 aa14.75□□□□□ -0.05
COL4A1-204ENST00000543140 PAMR1Q6UXH9 720 aa14.75□□□□□ -0.05
COL4A1-204ENST00000543140 ZNF417Q8TAU3 575 aa14.75□□□□□ -0.05
COL4A1-204ENST00000543140 ZNF587Q96SQ5 575 aaPredicted RBP14.75□□□□□ -0.05
COL4A1-204ENST00000543140 BRD7Q9NPI1 651 aa14.75□□□□□ -0.05
COL4A1-204ENST00000543140 FREM3P0C091 2139 aa14.75□□□□□ -0.05
COL4A1-204ENST00000543140 PIN1P1O15428 100 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 OR6A2O95222 327 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 MT-ATP6P00846 226 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 EPXP11678 715 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 PSKH1P11801 424 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 SGCBQ16585 318 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 ZNF385CQ66K41 422 aaPredicted RBP14.74□□□□□ -0.05
COL4A1-204ENST00000543140 FAM199XQ6PEV8 388 aaPredicted RBP14.74□□□□□ -0.05
COL4A1-204ENST00000543140 FAM220AQ7Z4H9 259 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 CPEB2Q7Z5Q1 589 aaKnown RBP14.74□□□□□ -0.05
COL4A1-204ENST00000543140 WDR5BQ86VZ2 330 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 CDC20BQ86Y33 519 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 RGP1Q92546 391 aaPredicted RBP14.74□□□□□ -0.05
COL4A1-204ENST00000543140 SPSB2Q99619 263 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 NOTOA8MTQ0 251 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 A8MV72 311 aaPredicted RBP14.74□□□□□ -0.05
COL4A1-204ENST00000543140 SHISA8B8ZZ34 492 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 LAMTOR5O43504 91 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 LANCL1O43813 399 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 FZD7O75084 574 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 AHSA1O95433 338 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 HLA-DQB1P01920 261 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 NPR2P20594 1047 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 TCEA1P23193 301 aaKnown RBP14.74□□□□□ -0.05
COL4A1-204ENST00000543140 PTBP1P26599 531 aaKnown RBP eCLIP14.74□□□□□ -0.05
COL4A1-204ENST00000543140 MAP2K3P46734 347 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 EFR3AQ14156 821 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 ODF4Q2M2E3 257 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 MAMSTRQ6ZN01 415 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 LRRC69Q6ZNQ3 347 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 ASB18Q6ZVZ8 466 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 ATOH1Q92858 354 aaPredicted RBP14.74□□□□□ -0.05
COL4A1-204ENST00000543140 NAT6Q93015 286 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 UBL7Q96S82 380 aaPredicted RBP14.74□□□□□ -0.05
COL4A1-204ENST00000543140 ZNF281Q9Y2X9 895 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 HRH3Q9Y5N1 445 aa14.74□□□□□ -0.05
COL4A1-204ENST00000543140 TMEM221A6NGB7 291 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 ANKRD61A6NGH8 418 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.73□□□□□ -0.05
COL4A1-204ENST00000543140 LYRM1O43325 122 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 UPK3AO75631 287 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 GATBO75879 557 aaKnown RBP14.73□□□□□ -0.05
COL4A1-204ENST00000543140 TACSTD2P09758 323 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 TFPIP10646 304 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 TDGF1P13385 188 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 SRMP19623 302 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 RPL27P61353 136 aaKnown RBP14.73□□□□□ -0.05
COL4A1-204ENST00000543140 RIN1Q13671 783 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 MELKQ14680 651 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 ETFDHQ16134 617 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 RSBN1Q5VWQ0 802 aaPredicted RBP14.73□□□□□ -0.05
COL4A1-204ENST00000543140 ZNF544Q6NX49 715 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 ESPNLQ6ZVH7 1005 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 ZNF433Q8N7K0 673 aaPredicted RBP14.73□□□□□ -0.05
COL4A1-204ENST00000543140 ARL5BQ96KC2 179 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 ABHD1Q96SE0 405 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 INTS14Q96SY0 518 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 AMELYQ99218 206 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 FRRS1LQ9P0K9 344 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 POU2F3Q9UKI9 436 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 PAIP2BQ9ULR5 123 aaKnown RBP14.73□□□□□ -0.05
COL4A1-204ENST00000543140 RBMX2Q9Y388 322 aaKnown RBP14.73□□□□□ -0.05
COL4A1-204ENST00000543140 MED12Q93074 2177 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 VSTM2BA6NLU5 285 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 ZNF879B4DU55 563 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 MEN1O00255 615 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 GPRIN2O60269 458 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 SLC16A7O60669 478 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 KRT8P05787 483 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 PRKAR1AP10644 381 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 HLA-DOBP13765 273 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 PITPNBP48739 271 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 C17orf67Q0P5P2 114 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 RNASE12Q5GAN4 147 aaKnown RBP14.73□□□□□ -0.05
COL4A1-204ENST00000543140 TRILQ7L0X0 811 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 RDH10Q8IZV5 341 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 NUBPLQ8TB37 319 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 KLHL15Q96M94 604 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 DERL3Q96Q80 235 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 GFM1Q96RP9 751 aaKnown RBP14.73□□□□□ -0.05
COL4A1-204ENST00000543140 IER2Q9BTL4 223 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 KLRF1Q9NZS2 232 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 KCNG2Q9UJ96 466 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 MRPS7Q9Y2R9 242 aaKnown RBP14.73□□□□□ -0.05
COL4A1-204ENST00000543140 KIF26BQ2KJY2 2108 aa14.73□□□□□ -0.05
COL4A1-204ENST00000543140 PRSS37A4D1T9 235 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 PLPP3O14495 311 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 OR2J2O76002 312 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 DXOO77932 396 aaKnown RBP14.72□□□□□ -0.05
COL4A1-204ENST00000543140 SOX2P48431 317 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 UNQ9370/PRO34162Q6UXP9 181 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 SLC35D2Q76EJ3 337 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 SCAIQ8N9R8 606 aa14.72□□□□□ -0.05
COL4A1-204ENST00000543140 TMEM234Q8WY98 164 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms