RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 OR1J2Q8NGS2 313 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 GLYATL2Q8WU03 294 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 LMF1Q96S06 567 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 UTP23Q9BRU9 249 aaKnown RBP11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 FBXO34Q9NWN3 711 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 WNT6Q9Y6F9 365 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 TET1Q8NFU7 2136 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 TMEM72A0PK05 275 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 PQLC2LA1A4F0 135 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 TSPAN11A1L157 253 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 GGT3PA6NGU5 568 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 SULT1C2O00338 296 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 XRCC3O43542 346 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 VEGFDO43915 354 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 NDUFB2O95178 105 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 CAPZA1P52907 286 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 NKPD1Q17RQ9 610 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 DCST2Q5T1A1 773 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 LRRTM1Q86UE6 522 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF511Q8NB15 262 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 STOML3Q8TAV4 291 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 PPP1R1CQ8WVI7 109 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 AICDAQ9GZX7 198 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 KCNK15Q9H427 330 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 PRDM7Q9NQW5 492 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 C13orf42A0A1B0GVH6 325 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 C5orf51A6NDU8 294 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 IMPA2O14732 288 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 NR0B1P51843 470 aaKnown RBP11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 DUSP8Q13202 625 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 CSRP2Q16527 193 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ARHGAP40Q5TG30 622 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 C11orf87Q6NUJ2 197 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 JMJD6Q6NYC1 403 aaPredicted RBP11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 TMEM205Q6UW68 189 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF704Q6ZNC4 412 aaPredicted RBP11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 TCEAL8Q8IYN2 117 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 OR10R2Q8NGX6 335 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 RXFP4Q8TDU9 374 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 TMEM106AQ96A25 262 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 Q96M85 177 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 SPSB2Q99619 263 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 COMMD4Q9H0A8 199 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 LMAN2LQ9H0V9 348 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 RXFP3Q9NSD7 469 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ANKRD10Q9NXR5 420 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 DCNP07585 359 aaKnown RBP11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 NID1P14543 1247 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 NPBWR1P48145 328 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 EEF1A1P68104 462 aaKnown RBP11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 RAB33AQ14088 237 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 RBM39Q14498 530 aaKnown RBP11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 PRRT3Q5FWE3 981 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ACOT7LQ6ZUV0 252 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 PGAP1Q75T13 922 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ZBTB8AQ96BR9 441 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ULBP3Q9BZM4 244 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 TLNRD1Q9H1K6 362 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 SPHK2Q9NRA0 654 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 A0A1B0GWA3 101 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 RAD1O60671 282 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 NFYBP25208 207 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 POU3F4P49335 361 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ACTBP60709 375 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ACTG1P63261 375 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ADAM8P78325 824 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF528Q3MIS6 628 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ARMC10Q8N2F6 343 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 RASD2Q96D21 266 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 LMLNQ96KR4 655 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 MFRPQ9BY79 579 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 PITHD1Q9GZP4 211 aaPredicted RBP11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ZMAT3Q9HA38 289 aaKnown RBP11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 KCNK6Q9Y257 313 aa11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.74□□□□□ -0.53
SFSWAP-209ENST00000540469 A0A1B0GTH9 108 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 A0A1W2PPV9 198 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 MCIDASD6RGH6 385 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 CCL16O15467 120 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 TXNL1O43396 289 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 KCNAB3O43448 404 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 CYB5AP00167 134 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 PRNPP04156 253 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 ATXN8OSP0DMR3 200 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 PTGFRP43088 359 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 EFNB2P52799 333 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 ATP1B3P54709 279 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 HTRA4P83105 476 aaPredicted RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 PEA15Q15121 130 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 IRF4Q15306 451 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 ARHGAP11BQ3KRB8 267 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF658BQ4V348 819 aaPredicted RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 TRMT12Q53H54 448 aaKnown RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 FIP1L1Q6UN15 594 aaKnown RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 GABRG1Q8N1C3 465 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 OR4K14Q8NGD5 310 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 ZC3H10Q96K80 434 aaKnown RBP11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF285Q96NJ3 590 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 HRH4Q9H3N8 390 aa11.73□□□□□ -0.53
SFSWAP-209ENST00000540469 OR2S2Q9NQN1 319 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms