RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 BABAM2Q9NXR7 383 aa9.25□□□□□ -0.93
HDAC3-214ENST00000495485 ALKBH4Q9NXW9 302 aa9.25□□□□□ -0.93
HDAC3-214ENST00000495485 CLEC2DQ9UHP7 191 aa9.25□□□□□ -0.93
HDAC3-214ENST00000495485 DKKL1Q9UK85 242 aa9.25□□□□□ -0.93
HDAC3-214ENST00000495485 ZNF346Q9UL40 294 aaKnown RBP9.25□□□□□ -0.93
HDAC3-214ENST00000495485 CCDC182A6NF36 153 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 HSPB2A8KAH6 182 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 LRRN3E7EW58 273 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 NPIPA5E9PKD4 350 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 C11orf98E9PRG8 122 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 LINC01387J3KSC0 135 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 PLPP3O14495 311 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 SERPINA3P01011 423 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 F13BP05160 661 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 LIMS3P0CW19 117 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 LIMS4P0CW20 117 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 ZNF17P17021 662 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 SPI1P17947 270 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 ITGA3P26006 1051 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 DPP4P27487 766 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 GABRA5P31644 462 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 S100A5P33763 92 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 ACVR1BP36896 505 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 GBX2P52951 348 aaPredicted RBP9.24□□□□□ -0.93
HDAC3-214ENST00000495485 LSM3P62310 102 aaKnown RBP9.24□□□□□ -0.93
HDAC3-214ENST00000495485 SLC35A1P78382 337 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 RUNX1T1Q06455 604 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 LTBQ06643 244 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 FOXF1Q12946 379 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 SPCS2Q15005 226 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 OR7A5Q15622 319 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 HSPB2Q16082 182 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 SLC6A19Q695T7 634 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 FCRLBQ6BAA4 426 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 ZNF544Q6NX49 715 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 ZNF322Q6U7Q0 402 aaPredicted RBP9.24□□□□□ -0.93
HDAC3-214ENST00000495485 IGFL2Q6UWQ7 119 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 PLEKHG7Q6ZR37 379 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 SLC16A9Q7RTY1 509 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 FAM122BQ7Z309 247 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 SLC35F2Q8IXU6 374 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 SYS1Q8N2H4 156 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 OR6K6Q8NGW6 343 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 SNX33Q8WV41 574 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 EXTL1Q92935 676 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 Q96M85 177 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 MESP1Q9BRJ9 268 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 CHCHD6Q9BRQ6 235 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 NAA11Q9BSU3 229 aaPredicted RBP9.24□□□□□ -0.93
HDAC3-214ENST00000495485 ALG12Q9BV10 488 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 PTDSS2Q9BVG9 487 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 NMNAT2Q9BZQ4 307 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 WDR12Q9GZL7 423 aaKnown RBP9.24□□□□□ -0.93
HDAC3-214ENST00000495485 SLC25A18Q9H1K4 315 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 PLGRKTQ9HBL7 147 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 ASB6Q9NWX5 421 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 TAS2R16Q9NYV7 291 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 TAS2R5Q9NYW4 299 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 STMN3Q9NZ72 180 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 CCDC59Q9P031 241 aaKnown RBP9.24□□□□□ -0.93
HDAC3-214ENST00000495485 CRNNQ9UBG3 495 aaPredicted RBP9.24□□□□□ -0.93
HDAC3-214ENST00000495485 NPIPA1Q9UND3 350 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 TRAPPC4Q9Y296 219 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 MRPS18CQ9Y3D5 142 aaKnown RBP9.24□□□□□ -0.93
HDAC3-214ENST00000495485 ADAM18Q9Y3Q7 739 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 FKBP7Q9Y680 259 aa9.24□□□□□ -0.93
HDAC3-214ENST00000495485 TNRC6AQ8NDV7 1962 aaKnown RBP9.24□□□□□ -0.93
HDAC3-214ENST00000495485 ZNF462Q96JM2 2506 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 J3QRE1 110 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 ARHGEF9O43307 516 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 EIF1BO60739 113 aaKnown RBP9.23□□□□□ -0.93
HDAC3-214ENST00000495485 SERPINI2O75830 405 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 CNR1P21554 472 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 NR4A1P22736 598 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 CCL11P51671 97 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 CSNK2A1P68400 391 aaPredicted RBP9.23□□□□□ -0.93
HDAC3-214ENST00000495485 OC90Q02509 493 aaPredicted RBP9.23□□□□□ -0.93
HDAC3-214ENST00000495485 DCTN2Q13561 401 aaKnown RBP9.23□□□□□ -0.93
HDAC3-214ENST00000495485 LINC00303Q3SY05 128 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 ZNF404Q494X3 552 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 CCDC58Q4VC31 144 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 PDSS1Q5T2R2 415 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 ATP1A1-AS1Q5TC04 95 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 OR2G6Q5TZ20 316 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 PRAMEF20Q5VT98 475 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 LIPKQ5VXJ0 399 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 TIGD3Q6B0B8 471 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 ARSKQ6UWY0 536 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 PAMR1Q6UXH9 720 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 SHFQ7M4L6 423 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 FAM220AQ7Z4H9 259 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 PXKQ7Z7A4 578 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 GTPBP8Q8N3Z3 284 aaPredicted RBP9.23□□□□□ -0.93
HDAC3-214ENST00000495485 MS4A15Q8N5U1 240 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 SIRT6Q8N6T7 355 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 ATP6V1C2Q8NEY4 427 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 ZNF417Q8TAU3 575 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 DYNC2LI1Q8TCX1 351 aa9.23□□□□□ -0.93
HDAC3-214ENST00000495485 SPRYD4Q8WW59 207 aaPredicted RBP9.23□□□□□ -0.93
HDAC3-214ENST00000495485 KISS1RQ969F8 398 aaPredicted RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms