RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 GALTP07902 379 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PRF1P14222 555 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 EIF2S3P41091 472 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ADIPOR2Q86V24 386 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 GKN2Q86XP6 184 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 FOXRED2Q8IWF2 684 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PDZD9Q8IXQ8 264 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM99Q8N816 258 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 COX18Q8N8Q8 333 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM185AQ8NFB2 350 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 OR2T33Q8NG76 320 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 OR6K6Q8NGW6 343 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 AQP10Q96PS8 301 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 NRIP2Q9BQI9 281 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PCBD2Q9H0N5 130 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 C20orf85Q9H1P6 137 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 LMAN1LQ9HAT1 526 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 OR5V1Q9UGF6 321 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PILRAQ9UKJ1 303 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ANHXE9PGG2 379 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 J3QLW9 94 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 XRCC3O43542 346 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ANXA2P07355 339 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF19P17023 458 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 MSX1P28360 303 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 GCGRP47871 477 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 CBFBQ13951 182 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 TRIM61Q5EBN2 209 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 LYSMD4Q5XG99 296 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 TCEAL6Q6IPX3 200 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 FAM111BQ6SJ93 734 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF793Q6ZN11 406 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 RIT1Q92963 219 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 HS6ST2Q96MM7 605 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 STACQ99469 402 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 WDR77Q9BQA1 342 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 OR52D1Q9H346 318 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM185BQ9H7F4 350 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 METTL8Q9H825 291 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PHPT1Q9NRX4 125 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 A0A1W2PPC1 479 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ATP6V1G2-DDX39BF2Z307 99 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 RAB3BP20337 219 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 LCN1P31025 176 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 SIRPAP78324 504 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 QRFPP83859 136 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 SURF2Q15527 256 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 LINC00303Q3SY05 128 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 BCL2L15Q5TBC7 163 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 CARD17Q5XLA6 110 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 SSX6Q7RTT6 188 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 GDF7Q7Z4P5 450 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 LDLRAD3Q86YD5 345 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 OR2L2Q8NH16 312 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 HPSE2Q8WWQ2 592 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ADAD1Q96M93 576 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF285Q96NJ3 590 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 C11orf1Q9H5F2 150 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 RDH8Q9NYR8 311 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 FEZF1A0PJY2 475 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF264O43296 627 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 BCL2L11O43521 198 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PRAMEF2O60811 474 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 RLN2P04090 185 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 S100A9P06702 114 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PPICP45877 212 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 SLC25A35Q3KQZ1 300 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 FNDC7Q5VTL7 733 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ADAMTSL4Q6UY14 1074 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 OR4E2Q8NGC2 313 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 CCDC74AQ96AQ1 378 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PKP4Q99569 1192 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 SLC6A20Q9NP91 592 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 FBXO9Q9UK97 447 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 VWA8A3KMH1 1905 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 HMGN2P05204 90 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 UBBP0CG47 229 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 UBCP0CG48 685 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF81P51508 661 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 P2RX1P51575 399 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 AP3S2P59780 193 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 RPS27AP62979 156 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 UBA52P62987 128 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 CCL7P80098 99 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PRDX1Q06830 199 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 RBMS2Q15434 407 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ARHGAP11BQ3KRB8 267 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 OR5AP2Q8NGF4 316 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 FANK1Q8TC84 345 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 MR1Q95460 341 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 MRPL38Q96DV4 380 aaKnown RBP4.88□□□□□ -1.63
SYNE1-220ENST00000471834 RBCK1Q9BYM8 510 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 CST11Q9H112 138 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 SEMA4GQ9NTN9 838 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 C2orf42Q9NWW7 574 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 KDM4BO94953 1096 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 RENP00797 406 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 CISD3P0C7P0 127 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 EN2P19622 333 aaPredicted RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms