RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 LIN52Q52LA3 116 aa14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 HIKESHIQ53FT3 197 aa14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 ZNF311Q5JNZ3 666 aa14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 GRINAQ7Z429 371 aa14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 ARHGAP24Q8N264 748 aa14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 RFLNBQ8N5W9 214 aa14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 ZNF563Q8TA94 476 aa14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 PLA2G12AQ9BZM1 189 aa14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 SLC13A4Q9UKG4 626 aa14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 PRPF19Q9UMS4 504 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 USP22Q9UPT9 525 aa14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 TRAPPC4Q9Y296 219 aa14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 SPIN1Q9Y657 262 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-215ENST00000597649 M0QX08 132 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 TCF21O43680 179 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 CDH2P19022 906 aaPredicted RBP14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 MPGP29372 298 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 CLK1P49759 484 aaKnown RBP14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 SNRPD2P62316 118 aaKnown RBP14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 ADIPOQQ15848 244 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 MEX3DQ86XN8 651 aaKnown RBP14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 VRK2Q86Y07 508 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 ARMC8Q8IUR7 673 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 CMIPQ8IY22 773 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 BOD1Q96IK1 185 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 THTPAQ9BU02 230 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 PARPBPQ9NWS1 579 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 ZNF443Q9Y2A4 671 aaPredicted RBP14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 SLC35A3Q9Y2D2 325 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 DSPPQ9NZW4 1301 aa14.3□□□□□ -0.12
SHKBP1-215ENST00000597649 TMEM72A0PK05 275 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 CXCR6O00574 342 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 LILRA1O75019 489 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 STAMBPO95630 424 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 HSD17B1P14061 328 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 CFPP27918 469 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 IDH2P48735 452 aaKnown RBP14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 TGFBR3Q03167 851 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 SLC46A3Q7Z3Q1 461 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 BHLHE22Q8NFJ8 381 aaPredicted RBP14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 CNOT9Q92600 299 aaKnown RBP14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 FAM162AQ96A26 154 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 MCUR1Q96AQ8 359 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 SLC7A6OSQ96CW6 309 aaPredicted RBP14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 ZNF385AQ96PM9 386 aaKnown RBP14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 PLK3Q9H4B4 646 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 CA10Q9NS85 328 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 GMPR2Q9P2T1 348 aaKnown RBP14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 SLC9A8Q9Y2E8 581 aa14.29□□□□□ -0.12
SHKBP1-215ENST00000597649 TMED7-TICAM2A0A0A6YYA0 188 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 ZC3H12DA2A288 527 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 B9A039 149 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 AP3D1O14617 1153 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 DNAJC8O75937 253 aaPredicted RBP14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 WNT11O96014 354 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 OR4A8P0C604 315 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 RPS4Y1P22090 263 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 FKBP2P26885 142 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 SLC35A1P78382 337 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 LGALS3BPQ08380 585 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 CEACAM7Q14002 265 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 LRRC23Q53EV4 343 aaPredicted RBP14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 ANKRD16Q6P6B7 361 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 ZNF836Q6ZNA1 936 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 CCDC80Q76M96 950 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 ZCCHC24Q8N2G6 241 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 FAM156AQ8NDB6 213 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 ZNF540Q8NDQ6 660 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 RASSF5Q8WWW0 418 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 SLC38A2Q96QD8 506 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 SEC61A2Q9H9S3 476 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 CD300AQ9UGN4 299 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 EGFL7Q9UHF1 273 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 TMEFF2Q9UIK5 374 aaPredicted RBP14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 OSGIN1Q9UJX0 560 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 TMED7Q9Y3B3 224 aa14.28□□□□□ -0.12
SHKBP1-215ENST00000597649 EIF1BO60739 113 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 PDE5AO76074 875 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 MFN2O95140 757 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 VENTXO95231 258 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 OPN1SWP03999 348 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 IGFBP1P08833 259 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 TACSTD2P09758 323 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 NCK1P16333 377 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 GIFP27352 417 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 PRKAR1BP31321 381 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 KDELR2P33947 212 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 MSX2P35548 267 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 PCBP3P57721 371 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 BNIP2Q12982 314 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 EFNB3Q15768 340 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 MRPL2Q5T653 305 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 C1QTNF12Q5T7M4 302 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 GLYATQ6IB77 296 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 VHLLQ6RSH7 139 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 TMEM99Q8N816 258 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 SMYD1Q8NB12 490 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 TMEM45BQ96B21 275 aa14.27□□□□□ -0.13
SHKBP1-215ENST00000597649 NAA11Q9BSU3 229 aaPredicted RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms