RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	L3HYPDH	Q96EM0	354 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	BSCL2	Q96G97	398 aa	Predicted RBP	4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	MAGED4	Q96JG8	741 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	GPR78	Q96P69	363 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	HIST1H2AA	Q96QV6	131 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ZNF607	Q96SK3	696 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ZNF382	Q96SR6	550 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	CSF3R	Q99062	836 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	PIGQ	Q9BRB3	760 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	NUF2	Q9BZD4	464 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	MMP27	Q9H306	513 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	VCX	Q9H320	206 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ANKZF1	Q9H8Y5	726 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	C12orf10	Q9HB07	376 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	EML4	Q9HC35	981 aa	Known RBP	4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	GPR35	Q9HC97	309 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	KLHL1	Q9NR64	748 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	THAP1	Q9NVV9	213 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ANKRD10	Q9NXR5	420 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	OR6C3	Q9NZP0	311 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	SENP1	Q9P0U3	644 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	VPS29	Q9UBQ0	182 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	SEC14L3	Q9UDX4	400 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	EXO1	Q9UQ84	846 aa	Known RBP	4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ENTPD4	Q9Y227	616 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	RCE1	Q9Y256	329 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	KLF13	Q9Y2Y9	288 aa	Predicted RBP	4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	CMAHP	Q9Y471	501 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	CSAG2	Q9Y5P2	127 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ZNF780B	Q9Y6R6	833 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ANKRD12	Q6UB98	2062 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	SMG1	Q96Q15	3661 aa	Known RBP	4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	NBEA	Q8NFP9	2946 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	ZFYVE26	Q68DK2	2539 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	SCN3A	Q9NY46	2000 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	CCDC88C	Q9P219	2028 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792		A0A0A6YYD5	115 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792		A0A1W2PPM1	405 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	PRSS29P	A6NIE9	313 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	KLRC4-KLRK1	H3BQV0	150 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	TFEC	O14948	347 aa	Predicted RBP	4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	FGF17	O60258	216 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	MGRN1	O60291	552 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	DNAJB6	O75190	326 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	KRT36	O76013	467 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	GPR75	O95800	540 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	AIFM1	O95831	613 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	TBX6	O95947	436 aa	Predicted RBP	4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	BCL10	O95999	233 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	PDYN	P01213	254 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	APOA1	P02647	267 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	SHBG	P04278	402 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	KLK1	P06870	262 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	CHRM4	P08173	479 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	NUDT17	P0C025	328 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	SPTB	P11277	2137 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	MMP9	P14780	707 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	POU2F1	P14859	743 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	ABO	P16442	354 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	DDX5	P17844	614 aa	Known RBP	4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	ATP6V1C1	P21283	382 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	NT5E	P21589	574 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	GCA	P28676	217 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	UQCRFS1	P47985	274 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	TMED10	P49755	219 aa	Known RBP	4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	ENTPD1	P49961	510 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	HLCS	P50747	726 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	GPR143	P51810	404 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	HNRNPF	P52597	415 aa	Known RBP	4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	EFNA3	P52797	238 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	TPTE	P56180	551 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	MLF1	P58340	268 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	HILS1	P60008	231 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	VSNL1	P62760	191 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	ERVK-8	P63133	956 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	PLGLB1	Q02325	96 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	HEPACAM	Q14CZ8	416 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	SSX2	Q16385	188 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	AANAT	Q16613	207 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	EIF2S3L	Q2VIR3	472 aa	Known RBP	4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	GPAT3	Q53EU6	434 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	TMEM41B	Q5BJD5	291 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	PRAMEF8	Q5VWM4	474 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	WBP2NL	Q6ICG8	309 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	SPINK14	Q6IE38	97 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	SLC25A25	Q6KCM7	469 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	H3F3C	Q6NXT2	135 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	OPN5	Q6U736	354 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	ZNF793	Q6ZN11	406 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	RPS27L	Q71UM5	84 aa	Known RBP	4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	TPRA1	Q86W33	373 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	ZDHHC21	Q8IVQ6	265 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	OR4N5	Q8IXE1	308 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	EID3	Q8N140	333 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	COMMD1	Q8N668	190 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	C1orf52	Q8N6N3	182 aa	Known RBP	4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	OR4K14	Q8NGD5	310 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	SSC4D	Q8WTU2	575 aa		4.23	□□□□□ -1.73
ZNF540-204	ENST00000586792	ROBO4	Q8WZ75	1007 aa		4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms