RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 RSC1A1Q92681 617 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 MAP3K3Q99759 626 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 COMMD4Q9H0A8 199 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 SUV39H2Q9H5I1 410 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 C14orf105Q9NVL8 296 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 TAS2R8Q9NYW2 309 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 A0A087WV62 115 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 BTBD17A6NE02 478 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 RIIAD1A6NNX1 92 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 NKX2-2O95096 273 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 DBIP07108 87 aaKnown RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 CELP19835 753 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 KHKP50053 298 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 ARHGDIBP52566 201 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 CTSCP53634 463 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 MAZP56270 477 aaKnown RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 SMAD2Q15796 467 aaKnown RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 VITQ6UXI7 678 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF704Q6ZNC4 412 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 FAM122BQ7Z309 247 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 HMGN2P46Q86SG4 172 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 MARCH9Q86YJ5 346 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 ETFBKMTQ8IXQ9 262 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 SAMD14Q8IZD0 417 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 FTMTQ8N4E7 242 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 PNLDC1Q8NA58 520 aaKnown RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 OR8H1Q8NGG4 311 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 PIGXQ8TBF5 258 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 SLC25A28Q96A46 364 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 SLC25A36Q96CQ1 311 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 SLC35G5Q96KT7 338 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF251Q9BRH9 671 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 MEPEQ9NQ76 525 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 FARSAQ9Y285 508 aaKnown RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 HIF3AQ9Y2N7 669 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 A0A087WUJ7 227 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 A0A0D9SG52 128 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 AGR2O95994 175 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 SRP14P37108 136 aaKnown RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 RAB2AP61019 212 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 SLC48A1Q6P1K1 146 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 MISPQ8IVT2 679 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 VN1R2Q8NFZ6 395 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 OR10H5Q8NGA6 315 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 PHOSPHO2Q8TCD6 241 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 ADAMTS15Q8TE58 950 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 OSTF1Q92882 214 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 C12orf66Q96MD2 445 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 DGAT2Q96PD7 388 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 LGR4Q9BXB1 951 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 TVP23BQ9NYZ1 205 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 SH3BGRL2Q9UJC5 107 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 RASD1Q9Y272 281 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 M0R129 80 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 PGRMC2O15173 223 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 PPIHO43447 177 aaKnown RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 TNFSF14O43557 240 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 HPGDSO60760 199 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 NPIPB7O75200 414 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 NME6O75414 186 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 CLDN7O95471 211 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 C1orf105O95561 183 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 CD14P08571 375 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 IL3P08700 152 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 ZBTB25P24278 435 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 TNFAIP8L2Q6P589 184 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 ABHD17CQ6PCB6 329 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 NPSR1Q6W5P4 371 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 ABHD13Q7L211 337 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM203Q969S6 136 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 MRGPRFQ96AM1 343 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 HES7Q9BYE0 225 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 C8orf33Q9H7E9 229 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 COPS7AQ9UBW8 275 aa4.9□□□□□ -1.63
SYNE1-220ENST00000471834 C19orf53Q9UNZ5 99 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-220ENST00000471834 SDC3O75056 442 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 MTX2O75431 263 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 OPN1SWP03999 348 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ALDOBP05062 364 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 BCHEP06276 602 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 HSD11B1P28845 292 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 DCTDP32321 178 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ARF3P61204 181 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ARF1P84077 181 aaKnown RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 MGAT2Q10469 447 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 GPR68Q15743 365 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 OR5M10Q6IEU7 315 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF600Q6ZNG1 722 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 NUDT13Q86X67 352 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 CATSPERDQ86XM0 798 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 PXYLP1Q8TE99 480 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 HCAR1Q9BXC0 346 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SRMSQ9H3Y6 488 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 RHCGQ9UBD6 479 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 METTL1Q9UBP6 276 aaKnown RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 MDC1Q14676 2089 aaKnown RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 LOC105369274A0A096LPK9 316 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 FAM86C2PA6NEL3 165 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 FAM74A7A6NL05 159 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SRSF10O75494 262 aaKnown RBP4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms