RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 RUNDC3AQ59EK9 446 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 ALG10BQ5I7T1 473 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 C11orf71Q6IPW1 123 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 NIPAL3Q6P499 406 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 DPP10Q8N608 796 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 OR6S1Q8NH40 331 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 MAGEE2Q8TD90 523 aaPredicted RBP16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 KTI12Q96EK9 354 aaPredicted RBP16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 EPYCQ99645 322 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 C1QTNF6Q9BXI9 259 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 TMEM27Q9HBJ8 222 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 ANGPT4Q9Y264 503 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 NDUFAF1Q9Y375 327 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 SONP18583 2426 aaKnown RBP16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 TRAV36DV7A0A075B6V5 113 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 AKAP8O43823 692 aaKnown RBP16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 APOBEC3AP31941 199 aaPredicted RBP16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 DSCR9P59020 149 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 UBE2NP61088 152 aaKnown RBP16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 CHRNB3Q05901 458 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 ADRM1Q16186 407 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 SWT1Q5T5J6 900 aaKnown RBP16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 METTL21CQ5VZV1 264 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 HMBOX1Q6NT76 420 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 H1FNTQ75WM6 255 aaPredicted RBP16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 ARMC8Q8IUR7 673 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 C10orf111Q8N326 155 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 C11orf65Q8NCR3 313 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 ADPRHL1Q8NDY3 354 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 OR1K1Q8NGR3 316 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 RSPO3Q9BXY4 272 aaPredicted RBP16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 IKZF5Q9H5V7 419 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 CORINQ9Y5Q5 1042 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 ATP23Q9Y6H3 246 aa16.68■□□□□ 0.26
CCDC28A-203ENST00000617445 A0A087WUJ7 227 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 ARPC4-TTLL3A0A0A6YYG9 625 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 RNF223E7ERA6 249 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 RPL36A-HNRNPH2H7BZ11 118 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 ANGPT2O15123 496 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 TPST1O60507 370 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 CDH2P19022 906 aaPredicted RBP16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 HTR2AP28223 471 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 CLDN17P56750 224 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 RGS8P57771 180 aaPredicted RBP16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 SLC25A3Q00325 362 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 SPOCK1Q08629 439 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 C1DQ13901 141 aaKnown RBP16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 RAB35Q15286 201 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 TBRG1Q3YBR2 411 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 HIKESHIQ53FT3 197 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 ANKRD16Q6P6B7 361 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 RANBP3LQ86VV4 465 aaPredicted RBP16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 SLC30A8Q8IWU4 369 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 FAM169BQ8N8A8 192 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 BCL2L2Q92843 193 aaPredicted RBP16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 TAAR8Q969N4 342 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 CPPED1Q9BRF8 314 aaPredicted RBP16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 RHNO1Q9BSD3 238 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 CACNG6Q9BXT2 260 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 MRGBPQ9NV56 204 aa16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 GDF2Q9UK05 429 aaPredicted RBP16.67■□□□□ 0.26
CCDC28A-203ENST00000617445 H7C417 338 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 FMO6PO60774 539 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 SLC43A1O75387 559 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 ZNF432O94892 652 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 MFN2O95140 757 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 LGI1O95970 557 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 C8BP07358 591 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 ARFGEF3Q5TH69 2177 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 B3GLCTQ6Y288 498 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 DHDDSQ86SQ9 333 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 CCDC36Q8IYA8 594 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 SCAIQ8N9R8 606 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 ANKRD27Q96NW4 1050 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 SLC38A2Q96QD8 506 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 CGREF1Q99674 301 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 KCNS3Q9BQ31 491 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 B3GAT1Q9P2W7 334 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 PMF1-BGLAPU3KQ54 211 aa16.66■□□□□ 0.26
CCDC28A-203ENST00000617445 CR1P17927 2039 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 IGKV1D-42A0A075B6H8 117 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 A0A0B4J2E0 115 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 A0A1B0GX12 115 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 M0R082 166 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 SSX4O60224 188 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 EDF1O60869 148 aaKnown RBP16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 NDUFS7O75251 213 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 UPK3AO75631 287 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 TP53P04637 393 aaPredicted RBP16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 PCSK6P29122 969 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 GRPRP30550 384 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 NUDT6P53370 316 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 PCBP3P57721 371 aaKnown RBP16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 ROR2Q01974 943 aaKnown RBP16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 OR1Q1Q15612 314 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 CYP51A1Q16850 503 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 GLIPR1L2Q4G1C9 344 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 COMTD1Q86VU5 262 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 KDM8Q8N371 416 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 PIK3C3Q8NEB9 887 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms