RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	HAS2	Q92819	552 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	TANK	Q92844	425 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	SNRNP40	Q96DI7	357 aa	Known RBP	4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	ELMOD3	Q96FG2	381 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	SMIM10	Q96HG1	83 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	FAM71F1	Q96KD3	344 aa	Predicted RBP	4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	IMMP1L	Q96LU5	166 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	FYTTD1	Q96QD9	318 aa	Known RBP	4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	GPA33	Q99795	319 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	MAPKAP1	Q9BPZ7	522 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	MESP1	Q9BRJ9	268 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	NTMT1	Q9BV86	223 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	FAIM2	Q9BWQ8	316 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	MRPL37	Q9BZE1	423 aa	Known RBP	4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	OR8D2	Q9GZM6	311 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	CTDSP1	Q9GZU7	261 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	CDCP1	Q9H5V8	836 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	RPF2	Q9H7B2	306 aa	Known RBP	4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	VIPAS39	Q9H9C1	493 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	SPACA1	Q9HBV2	294 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	ZBTB20	Q9HC78	741 aa	Predicted RBP	4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	NUDT15	Q9NV35	164 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	ASF1B	Q9NVP2	202 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	KLHL28	Q9NXS3	571 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	TMEM216	Q9P0N5	145 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	CRNN	Q9UBG3	495 aa	Predicted RBP	4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	PEMT	Q9UBM1	199 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	NOTCH3	Q9UM47	2321 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	SLC12A4	Q9UP95	1085 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	ERVK-11	Q9UQG0	969 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	RNF11	Q9Y3C5	154 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	AP4B1	Q9Y6B7	739 aa		4.25	□□□□□ -1.73
ZNF540-204	ENST00000586792	CHD6	Q8TD26	2715 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	CPAMD8	Q8IZJ3	1885 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	LOC400499	M0QZD8	3231 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	IGKV3D-11	A0A0A0MRZ8	115 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	GNG14	A0A1W2PPG7	69 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	C1orf226	A1L170	272 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	TMEM247	A6NEH6	219 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	TCP11X1	B4DZS4	312 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	C4orf51	C9J302	202 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792		K7EQM0	130 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	FOXE1	O00358	373 aa	Predicted RBP	4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ST8SIA3	O43173	380 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	SPRY1	O43609	319 aa	Predicted RBP	4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	HCRTR2	O43614	444 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ZFAND5	O76080	213 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	OR4F21	O95013	312 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	SCEL	O95171	688 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	LGI1	O95970	557 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	SERPINA3	P01011	423 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	G6PD	P11413	515 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	RPA2	P15927	270 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	TSPAN8	P19075	237 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	IMPDH1	P20839	514 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	GNLY	P22749	145 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	EEF1B2	P24534	225 aa	Known RBP	4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	PIK3R1	P27986	724 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	POU1F1	P28069	291 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	CD1B	P29016	333 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	HSD17B3	P37058	310 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	HTR2B	P41595	481 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	HAAO	P46952	286 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	SSR4	P51571	173 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	F2RL1	P55085	397 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	PKNOX1	P55347	436 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	S100A12	P80511	92 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ID2	Q02363	134 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	FOLH1	Q04609	750 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ZNF91	Q05481	1191 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	TRAF3	Q13114	568 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	E2F2	Q14209	437 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	PDK3	Q15120	406 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	TSC22D1	Q15714	1073 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	PCGF3	Q3KNV8	242 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	SPIN4	Q56A73	249 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ZNF678	Q5SXM1	525 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	GFRAL	Q6UXV0	394 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	HSDL2	Q6YN16	418 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792		Q6ZWC4	215 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	KCTD20	Q7Z5Y7	419 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	CROCCP2	Q86T23	111 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	RTN4RL2	Q86UN3	420 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	TDRP	Q86YL5	185 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	GPALPP1	Q8IXQ4	340 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ST13P4	Q8IZP2	240 aa	Predicted RBP	4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	C4orf33	Q8N1A6	199 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	RNF175	Q8N4F7	328 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	KIF2B	Q8N4N8	673 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	ST6GALNAC3	Q8NDV1	305 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	CATSPER1	Q8NEC5	780 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	OR5L2	Q8NGL0	311 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	CDC26	Q8NHZ8	85 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	WDR20	Q8TBZ3	569 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	FAR1	Q8WVX9	515 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	CKAP2	Q8WWK9	683 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	RAB40A	Q8WXH6	277 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	PSMF1	Q92530	271 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	RIT1	Q92963	219 aa		4.24	□□□□□ -1.73
ZNF540-204	ENST00000586792	TMIGD2	Q96BF3	282 aa		4.24	□□□□□ -1.73

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