RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 TMEM44Q2T9K0 475 aa16.63■□□□□ 0.25
USP39-201ENST00000323701 FADS6Q8N9I5 356 aa16.63■□□□□ 0.25
USP39-201ENST00000323701 NTNG2Q96CW9 530 aa16.63■□□□□ 0.25
USP39-201ENST00000323701 UBL7Q96S82 380 aaPredicted RBP16.63■□□□□ 0.25
USP39-201ENST00000323701 GPR87Q9BY21 358 aa16.63■□□□□ 0.25
USP39-201ENST00000323701 ADGRL4Q9HBW9 690 aa16.63■□□□□ 0.25
USP39-201ENST00000323701 CPNE5Q9HCH3 593 aa16.63■□□□□ 0.25
USP39-201ENST00000323701 ERVK13-1Q9NX77 482 aa16.63■□□□□ 0.25
USP39-201ENST00000323701 A0A0G2JMM0 328 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 PNMA8CA0A1B0GUJ8 204 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 A0A1W2PPB8 328 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 A0A1W2PRS3 328 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 KIR3DP1A8MWS1 328 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 H3BML4 177 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 F10P00742 488 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 HCCSP53701 268 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 CHAF1BQ13112 559 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 KDM8Q8N371 416 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 RFLNBQ8N5W9 214 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 LSM14AQ8ND56 463 aaKnown RBP16.62■□□□□ 0.25
USP39-201ENST00000323701 ADAMTS17Q8TE56 1095 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 PAQR8Q8TEZ7 354 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 SLC39A7Q92504 469 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 NKD1Q969G9 470 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 ZMYND19Q96E35 227 aaPredicted RBP16.62■□□□□ 0.25
USP39-201ENST00000323701 GNRHR2Q96P88 292 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 CENPOQ9BU64 300 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 TMEM185BQ9H7F4 350 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 PTPRZ1P23471 2315 aaPredicted RBP16.62■□□□□ 0.25
USP39-201ENST00000323701 C21orf140B9A014 251 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 STMND1H3BQB6 276 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 AIREO43918 545 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 PFDN1O60925 122 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 PLGP00747 810 aaPredicted RBP16.62■□□□□ 0.25
USP39-201ENST00000323701 IFNGP01579 166 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 HTR3AP46098 478 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 GABREP78334 506 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 MESTQ5EB52 335 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 LIPKQ5VXJ0 399 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 H3F3CQ6NXT2 135 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 ZNF227Q86WZ6 799 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 ZNF417Q8TAU3 575 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 TBC1D15Q8TC07 691 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 TRMT61AQ96FX7 289 aaKnown RBP16.62■□□□□ 0.25
USP39-201ENST00000323701 ZNF587Q96SQ5 575 aaPredicted RBP16.62■□□□□ 0.25
USP39-201ENST00000323701 NMNAT2Q9BZQ4 307 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 ISG20L2Q9H9L3 353 aaKnown RBP16.62■□□□□ 0.25
USP39-201ENST00000323701 FRYQ5TBA9 3013 aa16.62■□□□□ 0.25
USP39-201ENST00000323701 LOC100506127A0A0U1RQW1 187 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 TMEM129A0AVI4 362 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 C12orf71A8MTZ7 269 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 FAM171A2A8MVW0 826 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 DCTN6O00399 190 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 HIST1H2ABP04908 130 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 MSX1P28360 303 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 APOBEC1P41238 236 aaKnown RBP16.61■□□□□ 0.25
USP39-201ENST00000323701 ZNF41P51814 821 aaPredicted RBP16.61■□□□□ 0.25
USP39-201ENST00000323701 WNT4P56705 351 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 LEG1Q6P5S2 330 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 HIST3H2AQ7L7L0 130 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 ZFP41Q8N8Y5 198 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 STK35Q8TDR2 534 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 HIST1H2ACQ93077 130 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 C1GALT1C1Q96EU7 318 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 CHCHD6Q9BRQ6 235 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 ANGPTL4Q9BY76 406 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 SDHAF3Q9NRP4 125 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 HPF1Q9NWY4 346 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 EXOSC1Q9Y3B2 195 aaKnown RBP16.61■□□□□ 0.25
USP39-201ENST00000323701 SLC22A31A6NKX4 558 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 CCRL2O00421 344 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 SERPINA7P05543 415 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 ICAM2P13598 275 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 HLA-DOBP13765 273 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 SNTA1Q13424 505 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 ANKDD1AQ495B1 522 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 GLYR1Q49A26 553 aaPredicted RBP16.61■□□□□ 0.25
USP39-201ENST00000323701 SLC25A53Q5H9E4 307 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 ACER2Q5QJU3 275 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 MAMDC2Q7Z304 686 aaPredicted RBP16.61■□□□□ 0.25
USP39-201ENST00000323701 WDFY1Q8IWB7 410 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 OR5J2Q8NH18 312 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 KLHL21Q9UJP4 597 aa16.61■□□□□ 0.25
USP39-201ENST00000323701 IRGMA1A4Y4 181 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 MAGEB3O15480 346 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 GPX5O75715 221 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 MT-ATP6P00846 226 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 TFP02787 698 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 SBK2P0C263 348 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 SPI1P17947 270 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 PAICSP22234 425 aaKnown RBP16.6■□□□□ 0.25
USP39-201ENST00000323701 AHCYP23526 432 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 SHC1P29353 583 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 SDHAP31040 664 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 SGCBQ16585 318 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 ATP1A1-AS1Q5TC04 95 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 SLC22A10Q63ZE4 541 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 SSX6Q7RTT6 188 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 PHC2Q8IXK0 858 aa16.6■□□□□ 0.25
USP39-201ENST00000323701 OR10H4Q8NGA5 316 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms