RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ADGRL4Q9HBW9 690 aa20.49■□□□□ 0.87
CDX1-201ENST00000231656 TXNL4BQ9NX01 149 aaKnown RBP20.49■□□□□ 0.87
CDX1-201ENST00000231656 CAB39Q9Y376 341 aaPredicted RBP20.49■□□□□ 0.87
CDX1-201ENST00000231656 GMFGO60234 142 aa20.48■□□□□ 0.87
CDX1-201ENST00000231656 CDC40O60508 579 aaKnown RBP eCLIP20.48■□□□□ 0.87
CDX1-201ENST00000231656 PGCP20142 388 aa20.48■□□□□ 0.87
CDX1-201ENST00000231656 INAQ16352 499 aa20.48■□□□□ 0.87
CDX1-201ENST00000231656 OPN5Q6U736 354 aa20.48■□□□□ 0.87
CDX1-201ENST00000231656 LRRC75AQ8NAA5 344 aa20.48■□□□□ 0.87
CDX1-201ENST00000231656 FAM98AQ8NCA5 519 aaKnown RBP20.48■□□□□ 0.87
CDX1-201ENST00000231656 KTI12Q96EK9 354 aaPredicted RBP20.48■□□□□ 0.87
CDX1-201ENST00000231656 THOC3Q96J01 351 aaKnown RBP20.48■□□□□ 0.87
CDX1-201ENST00000231656 DDOQ99489 341 aa20.48■□□□□ 0.87
CDX1-201ENST00000231656 SIAEQ9HAT2 523 aa20.48■□□□□ 0.87
CDX1-201ENST00000231656 INPP5EQ9NRR6 644 aa20.48■□□□□ 0.87
CDX1-201ENST00000231656 PNMA8CA0A1B0GUJ8 204 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 LRRTM2O43300 516 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 AKAP8O43823 692 aaKnown RBP20.47■□□□□ 0.87
CDX1-201ENST00000231656 SBK2P0C263 348 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 ASAH2BP0C7U1 165 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 ITPKBP27987 946 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 GABRA5P31644 462 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 SSR4P51571 173 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 P2RX1P51575 399 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 CBFBQ13951 182 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 JMJD6Q6NYC1 403 aaPredicted RBP20.47■□□□□ 0.87
CDX1-201ENST00000231656 ZFP41Q8N8Y5 198 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 OR10G3Q8NGC4 313 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 TMEM203Q969S6 136 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 FER1L6-AS2Q96M78 137 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 ALG8Q9BVK2 526 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 ISG20L2Q9H9L3 353 aaKnown RBP20.47■□□□□ 0.87
CDX1-201ENST00000231656 NANSQ9NR45 359 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 EML6Q6ZMW3 1958 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 CFAP47Q6ZTR5 3102 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 CEP295Q9C0D2 2601 aa20.47■□□□□ 0.87
CDX1-201ENST00000231656 IDH3BO43837 385 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 GYPBP06028 91 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 WT1P19544 449 aaPredicted RBP20.46■□□□□ 0.87
CDX1-201ENST00000231656 SOX6P35712 828 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 RPS19P39019 145 aaKnown RBP20.46■□□□□ 0.87
CDX1-201ENST00000231656 AQP2P41181 271 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 SLC16A1P53985 500 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 AIMP2Q13155 320 aaKnown RBP20.46■□□□□ 0.87
CDX1-201ENST00000231656 B3GNTL1Q67FW5 361 aaPredicted RBP20.46■□□□□ 0.87
CDX1-201ENST00000231656 CD200R1LQ6Q8B3 271 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 TMPRSS11AQ6ZMR5 421 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 C10orf53Q8N6V4 93 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 NPEPL1Q8NDH3 523 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 RNF138Q8WVD3 245 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 ASB15Q8WXK1 588 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 KATNB1Q9BVA0 655 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 C6orf62Q9GZU0 229 aaPredicted RBP20.46■□□□□ 0.87
CDX1-201ENST00000231656 CNTRLQ7Z7A1 2325 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 NKX2-8O15522 239 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 WISP1O95388 367 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 MRPL3P09001 348 aaKnown RBP20.46■□□□□ 0.87
CDX1-201ENST00000231656 GP1BBP13224 206 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 UQCRC1P31930 480 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 ERVK-25P63136 954 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 GALEQ14376 348 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 IL20RBQ6UXL0 311 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 CLEC1AQ8NC01 280 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 OR10H4Q8NGA5 316 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 GPR119Q8TDV5 335 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 TAAR8Q969N4 342 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 TBX5Q99593 518 aa20.46■□□□□ 0.87
CDX1-201ENST00000231656 DAPL1A0PJW8 107 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 BDH1Q02338 343 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 POU4F2Q12837 409 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 QPRTQ15274 297 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 ACER2Q5QJU3 275 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 KLBQ86Z14 1044 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 MISPQ8IVT2 679 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 TMEM156Q8N614 296 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 B4GALNT2Q8NHY0 566 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 TM9SF2Q99805 663 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 NMNAT2Q9BZQ4 307 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 KLHL1Q9NR64 748 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 RYDENQ9NUL5 291 aaKnown RBP20.45■□□□□ 0.86
CDX1-201ENST00000231656 SLC6A5Q9Y345 797 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 LOC400499M0QZD8 3231 aa20.45■□□□□ 0.86
CDX1-201ENST00000231656 BLOC1S5-TXNDC5H3BN57 136 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 NUDT14O95848 222 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 APEHP13798 732 aaKnown RBP20.44■□□□□ 0.86
CDX1-201ENST00000231656 CXCR1P25024 350 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 FABP5Q01469 135 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 GGTLC2Q14390 218 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 BICRALQ6AI39 1079 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 VASNQ6EMK4 673 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 C22orf42Q6IC83 251 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 FAM122BQ7Z309 247 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 ATP6V1C2Q8NEY4 427 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 DUSP19Q8WTR2 217 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 THAP4Q8WY91 577 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 SMPDL3BQ92485 455 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 RASD2Q96D21 266 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 C1GALT1C1Q96EU7 318 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 BARHL1Q9BZE3 327 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 FKRPQ9H9S5 495 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms