RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 AGKQ53H12 422 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 TTMPQ5BVD1 217 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 DHRS4L2Q6PKH6 230 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 C6orf89Q6UWU4 347 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 HDXQ7Z353 690 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 MSRB3Q8IXL7 192 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 WDR31Q8NA23 367 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 ELOA3Q8NG57 546 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 DNAJA4Q8WW22 397 aaPredicted RBP16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 DHRS9Q9BPW9 319 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 TMEM38AQ9H6F2 299 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 VIPAS39Q9H9C1 493 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 FKRPQ9H9S5 495 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 OBP2BQ9NPH6 170 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 ARGLU1Q9NWB6 273 aaPredicted RBP16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 POU2F3Q9UKI9 436 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 KRT33AO76009 404 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 PNMTP11086 282 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 SLC6A2P23975 617 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 TTKP33981 857 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 FOXG1P55316 489 aaPredicted RBP16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 TNK1Q13470 666 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 PAGE3Q5JUK9 113 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 KLHL24Q6TFL4 600 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 CREB3L2Q70SY1 520 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 NET1Q7Z628 596 aaPredicted RBP16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 NFKBIDQ8NI38 313 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 ZNF385AQ96PM9 386 aaKnown RBP16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 ZNF317Q96PQ6 595 aaPredicted RBP16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 ZNF607Q96SK3 696 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 VAPAQ9P0L0 249 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 SLAMF8Q9P0V8 285 aa16.73■□□□□ 0.27
CCDC28A-203ENST00000617445 ABCA1O95477 2261 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 TRBV5-3A0A0A0MS03 114 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 M0R1B8 84 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 FZD7O75084 574 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 SERPINB7O75635 380 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 GTF2E2P29084 291 aaKnown RBP16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 CDKN1AP38936 164 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 VEZF1Q14119 521 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 ZNF544Q6NX49 715 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 FBXL14Q8N1E6 418 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 MAGEB18Q96M61 343 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 ADAD1Q96M93 576 aaKnown RBP16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 HS6ST2Q96MM7 605 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 MOV10Q9HCE1 1003 aaKnown RBP16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 CBLN4Q9NTU7 201 aa16.72■□□□□ 0.27
CCDC28A-203ENST00000617445 A0A1W2PR80 420 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 FTCDNL1E5RQL4 147 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 E7EQL1 145 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 ZNF587BE7ETH6 402 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 BMP4P12644 408 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 EGR4Q05215 589 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 SCARB2Q14108 478 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 MFSD13AQ14CX5 517 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 FAM69AQ5T7M9 428 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 C9orf135Q5VTT2 229 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 FAM91A1Q658Y4 838 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 ULK3Q6PHR2 472 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 MUC15Q8N387 334 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 ANKK1Q8NFD2 765 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 TSPEARQ8WU66 669 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 CKAP2Q8WWK9 683 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 SLC38A4Q969I6 547 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 SIKE1Q9BRV8 207 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 LINC00470Q9BZP3 86 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 SELENONQ9NZV5 590 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 TESQ9UGI8 421 aaKnown RBP16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 LEF1Q9UJU2 399 aaPredicted RBP16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 SLC13A4Q9UKG4 626 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 TRIM33Q9UPN9 1127 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 RCE1Q9Y256 329 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 B3GALT5Q9Y2C3 310 aa16.71■□□□□ 0.27
CCDC28A-203ENST00000617445 LOC102725191A0A1B0GVB3 256 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 IGHV4-39P01824 125 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 HOXB1P14653 301 aaPredicted RBP16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 ZNF43P17038 809 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 RPS5P46782 204 aaKnown RBP16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 PPP2R2BQ00005 443 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 HOXC5Q00444 222 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 DLEU7Q6UYE1 221 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 DNM1P46Q6ZS02 220 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 EPHX4Q8IUS5 362 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 HIPK4Q8NE63 616 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 SLC25A36Q96CQ1 311 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 SLC47A1Q96FL8 570 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 OXGR1Q96P68 337 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 PTDSS2Q9BVG9 487 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 REG4Q9BYZ8 158 aa16.7■□□□□ 0.26
CCDC28A-203ENST00000617445 A0A1B0GWA3 101 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 AIM2O14862 343 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 H2AFXP16104 143 aaPredicted RBP16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 ACVR1BP36896 505 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 SELENOPP49908 381 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 FABP6P51161 128 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 SH3BGRP55822 239 aaPredicted RBP16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 NCALDP61601 193 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 RBBP4Q09028 425 aa16.69■□□□□ 0.26
CCDC28A-203ENST00000617445 C3orf36Q3SXR2 165 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms