RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ASPNQ9BXN1 380 aa26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 NANSQ9NR45 359 aa26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 CORINQ9Y5Q5 1042 aa26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 GCN1Q92616 2671 aaKnown RBP26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 CYTIPO60759 359 aa26.43■■□□□ 1.82
LIMCH1-211ENST00000509638 IL2RAP01589 272 aa26.43■■□□□ 1.82
LIMCH1-211ENST00000509638 CTBP2P56545 445 aa26.43■■□□□ 1.82
LIMCH1-211ENST00000509638 ZNF771Q7L3S4 317 aaPredicted RBP26.43■■□□□ 1.82
LIMCH1-211ENST00000509638 MAMDC2Q7Z304 686 aaPredicted RBP26.43■■□□□ 1.82
LIMCH1-211ENST00000509638 NAXEQ8NCW5 288 aa26.43■■□□□ 1.82
LIMCH1-211ENST00000509638 KLHL13Q9P2N7 655 aa26.43■■□□□ 1.82
LIMCH1-211ENST00000509638 DNAJB9Q9UBS3 223 aa26.43■■□□□ 1.82
LIMCH1-211ENST00000509638 ZNF229Q9UJW7 825 aa26.43■■□□□ 1.82
LIMCH1-211ENST00000509638 SLC5A6Q9Y289 635 aa26.43■■□□□ 1.82
LIMCH1-211ENST00000509638 DEAF1O75398 565 aaPredicted RBP26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 OR7A10O76100 309 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 GPR4P46093 362 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 HMGA2P52926 109 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 IST1P53990 364 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 PRKCDQ05655 676 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 RNPS1Q15287 305 aaKnown RBP26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 RIPPLY2Q5TAB7 128 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 OR2A2Q6IF42 318 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 ZFP1Q6P2D0 407 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 SLC43A2Q8N370 569 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 LRRC17Q8N6Y2 441 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 PIGXQ8TBF5 258 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 INTS12Q96CB8 462 aaKnown RBP26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 FAM46AQ96IP4 442 aaKnown RBP26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 CHST11Q9NPF2 352 aa26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 ERRFI1Q9UJM3 462 aaPredicted RBP26.42■■□□□ 1.82
LIMCH1-211ENST00000509638 CLOCKO15516 846 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 HNRNPRO43390 633 aaKnown RBP26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 PLGP00747 810 aaPredicted RBP26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 P2RY4P51582 365 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 LAPTM4AQ15012 233 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 MCEMP1Q8IX19 187 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 SCAIQ8N9R8 606 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 RND1Q92730 232 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 KRCC1Q9NPI7 259 aaPredicted RBP26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 MRPL39Q9NYK5 338 aaKnown RBP26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 KLHL9Q9P2J3 617 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 CLEC4AQ9UMR7 237 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 TMEM5Q9Y2B1 443 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 A0A0G2JNJ9 132 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 H3BNX3 289 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 OR10H3O60404 316 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 RCBTB2O95199 551 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 SAGP10523 405 aaPredicted RBP26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 FCGR1AP12314 374 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 MAKP20794 623 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 CEACAM8P31997 349 aaPredicted RBP26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 ADORA2A-AS1P86434 159 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 RASGEF1BQ0VAM2 473 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 ATP6AP1Q15904 470 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 MTFR2Q6P444 385 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 C10orf67Q8IYJ2 551 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 ZFP3Q96NJ6 502 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 PSD2Q9BQI7 771 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 Q9UFV3 132 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 B3GALT5Q9Y2C3 310 aa26.41■■□□□ 1.82
LIMCH1-211ENST00000509638 HTR3EA5X5Y0 456 aa26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 RRP9O43818 475 aaKnown RBP26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 E2F6O75461 281 aa26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 LDLRP01130 860 aa26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 ASAH2BP0C7U1 165 aa26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 TMIGD3P0DMS9 266 aaPredicted RBP26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 FUT1P19526 365 aa26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 FASP25445 335 aa26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 H1FNTQ75WM6 255 aaPredicted RBP26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 NANOGNBQ7Z5D8 188 aa26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 ADPRHL1Q8NDY3 354 aa26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 OR9Q2Q8NGE9 314 aa26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 OR5J2Q8NH18 312 aa26.4■■□□□ 1.82
LIMCH1-211ENST00000509638 LRRK2Q5S007 2527 aa26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 OMPP47874 163 aa26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 FOXF2Q12947 444 aa26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 PMS2P3Q13401 168 aa26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 GTF2IRD2BQ6EKJ0 949 aa26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 GPAT4Q86UL3 456 aa26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 GTF2IRD2Q86UP8 949 aa26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 CDK20Q8IZL9 346 aa26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 LRTOMTQ8WZ04 291 aa26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 STMN2Q93045 179 aa26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 GMPPAQ96IJ6 420 aaPredicted RBP26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 ING1Q9UK53 422 aaPredicted RBP26.39■■□□□ 1.82
LIMCH1-211ENST00000509638 ZNF716A6NP11 495 aa26.38■■□□□ 1.81
LIMCH1-211ENST00000509638 EFCAB9A8MZ26 197 aa26.38■■□□□ 1.81
LIMCH1-211ENST00000509638 CCNB2O95067 398 aa26.38■■□□□ 1.81
LIMCH1-211ENST00000509638 GK3PQ14409 553 aa26.38■■□□□ 1.81
LIMCH1-211ENST00000509638 TMEM225Q6GV28 225 aa26.38■■□□□ 1.81
LIMCH1-211ENST00000509638 TMEM179BQ7Z7N9 219 aa26.38■■□□□ 1.81
LIMCH1-211ENST00000509638 LIPHQ8WWY8 451 aa26.38■■□□□ 1.81
LIMCH1-211ENST00000509638 HSPB2A8KAH6 182 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 CDC42EP2O14613 210 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 SS18L1O75177 396 aaPredicted RBP26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 HIST1H2ABP04908 130 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 DNAJA1P31689 397 aaKnown RBP26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 SIRPAP78324 504 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 IL1RL1Q01638 556 aa26.37■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms