RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZNF596Q8TC21 504 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 RPS4Y2Q8TD47 263 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 SP7Q8TDD2 431 aaPredicted RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 SPACA9Q96E40 222 aaPredicted RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 NUDT11Q96G61 164 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 PDLIM2Q96JY6 352 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 ZNF300Q96RE9 604 aaPredicted RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 NDNQ99608 321 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 VKORC1Q9BQB6 163 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 C9orf16Q9BUW7 83 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 VN1R3Q9BXE9 311 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 PBOV1Q9GZY1 135 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 PAIP1Q9H074 479 aaKnown RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 R3HDMLQ9H3Y0 253 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 WDR54Q9H977 334 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 DMAC2Q9NW81 257 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 CIDEBQ9UHD4 219 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 AP4S1Q9Y587 144 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 MN1Q10571 1320 aaPredicted RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 ZNF264O43296 627 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 PSCAO43653 123 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 CEP152O94986 1710 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 FAM106CPP0CH98 169 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 HOXB1P14653 301 aaPredicted RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 MMP8P22894 467 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 PPT1P50897 306 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 CTBP1Q13363 440 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 SNTB2Q13425 540 aaKnown RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 ADRM1Q16186 407 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 CLEC12AQ5QGZ9 265 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 CDC42BPAQ5VT25 1732 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 TMEM244Q5VVB8 128 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 NCR3LG1Q68D85 454 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 ZNF770Q6IQ21 691 aaPredicted RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 TRAT1Q6PIZ9 186 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 CYHR1Q6ZMK1 362 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 SCUBE1Q8IWY4 988 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 HSD17B11Q8NBQ5 300 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 ABHD4Q8TB40 342 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 PYDC1Q8WXC3 89 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 PIGCQ92535 297 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 SPOCK2Q92563 424 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 MRPS24Q96EL2 167 aaKnown RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 METTL2AQ96IZ6 378 aaKnown RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 C7orf26Q96N11 449 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 OR2A14Q96R47 310 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 TXN2Q99757 166 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 VGLL1Q99990 258 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 OR51I2Q9H344 312 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 PLA2G3Q9NZ20 509 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 COPZ2Q9P299 210 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 PEMTQ9UBM1 199 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 LHX3Q9UBR4 397 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 CXorf51AA0A1B0GTR3 108 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 KCNAB3O43448 404 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 H2AFB2P0C5Z0 115 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 CT45A10P0DMU9 189 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 GABRA5P31644 462 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 SCTRP47872 440 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 PRKXP51817 358 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 DLX5P56178 289 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 SRSF5Q13243 272 aaKnown RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 IAH1Q2TAA2 248 aaPredicted RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 SAMD13Q5VXD3 122 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 SUSD1Q6UWL2 747 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 NHLRC1Q6VVB1 395 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 MOB3CQ70IA8 216 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 FAM71AQ8IYT1 594 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 ANKRD53Q8N9V6 530 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 RNF128Q8TEB7 428 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 GEMIN6Q8WXD5 167 aaKnown RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 ST8SIA1Q92185 356 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 TLCD1Q96CP7 247 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 SLC35E1Q96K37 410 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 TSNAXQ99598 290 aaKnown RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 COMMD5Q9GZQ3 224 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 VRTNQ9H8Y1 702 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 POPDC3Q9HBV1 291 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 PRDM7Q9NQW5 492 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 WRAP73Q9P2S5 460 aaPredicted RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 PLAGL1Q9UM63 463 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 LOC730098B7Z3J9 87 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 G3V3Y1 287 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 M0R082 166 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 FAAHO00519 579 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 TPST1O60507 370 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 APOL3O95236 402 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 VNN2O95498 520 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 ADRB2P07550 413 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 SLC35E2BP0CK96 405 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 GLRA1P23415 457 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 MSX2P35548 267 aaPredicted RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 GFRA1P56159 465 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 SEC61A1P61619 476 aaKnown RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 ERHP84090 104 aaKnown RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 FADDQ13158 208 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 MAMLD1Q13495 774 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 COL9A2Q14055 689 aaPredicted RBP3.77□□□□□ -1.81
USH2A-202ENST00000366942 IL18Q14116 193 aa3.77□□□□□ -1.81
USH2A-202ENST00000366942 ZNF787Q6DD87 383 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms