RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 GRPRP30550 384 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 LIMS1P48059 325 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 CLK1P49759 484 aaKnown RBP12.29□□□□□ -0.44
CD44-224ENST00000526669 PON3Q15166 354 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 ACSF3Q4G176 576 aaPredicted RBP12.29□□□□□ -0.44
CD44-224ENST00000526669 RPTNQ6XPR3 784 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 NCCRP1Q6ZVX7 275 aaPredicted RBP12.29□□□□□ -0.44
CD44-224ENST00000526669 MBOAT2Q6ZWT7 520 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 SLC46A3Q7Z3Q1 461 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 DOLPP1Q86YN1 238 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 C10orf67Q8IYJ2 551 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 LRRC17Q8N6Y2 441 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 ICA1LQ8NDH6 482 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 PIGXQ8TBF5 258 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 SGTBQ96EQ0 304 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 UCN2Q96RP3 112 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 NTN4Q9HB63 628 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 C6orf203Q9P0P8 240 aaPredicted RBP12.29□□□□□ -0.44
CD44-224ENST00000526669 ZNF835Q9Y2P0 537 aa12.29□□□□□ -0.44
CD44-224ENST00000526669 MAGED1Q9Y5V3 778 aaPredicted RBP12.29□□□□□ -0.44
CD44-224ENST00000526669 SPTBN1Q01082 2364 aaKnown RBP12.28□□□□□ -0.44
CD44-224ENST00000526669 SAC3D1A6NKF1 404 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 ZNF814B7Z6K7 855 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 FTCDNL1E5RQL4 147 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 M0R082 166 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 RAMP1O60894 148 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 OR7A10O76100 309 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 SYNGR4O95473 234 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 ENPP1P22413 925 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 FKBP2P26885 142 aaKnown RBP12.28□□□□□ -0.44
CD44-224ENST00000526669 DNAJA1P31689 397 aaKnown RBP12.28□□□□□ -0.44
CD44-224ENST00000526669 MAP2K6P52564 334 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 CSNK2A1P68400 391 aaPredicted RBP12.28□□□□□ -0.44
CD44-224ENST00000526669 PRKCDQ05655 676 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 RCN1Q15293 331 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 ZNF74Q16587 644 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 ZNF239Q16600 458 aaKnown RBP12.28□□□□□ -0.44
CD44-224ENST00000526669 FAM69AQ5T7M9 428 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 C1orf185Q5T7R7 199 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 ANKRD34AQ69YU3 496 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 RTL6Q6ICC9 239 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 C5orf46Q6UWT4 87 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 Q6ZPB1 254 aaPredicted RBP12.28□□□□□ -0.44
CD44-224ENST00000526669 P4HA3Q7Z4N8 544 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 TMEM99Q8N816 258 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 MFSD8Q8NHS3 518 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 ZNF417Q8TAU3 575 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 FNDC9Q8TBE3 224 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 ZNF587Q96SQ5 575 aaPredicted RBP12.28□□□□□ -0.44
CD44-224ENST00000526669 PRRG4Q9BZD6 226 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 SLC19A3Q9BZV2 496 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 KLHL4Q9C0H6 718 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 KLHL13Q9P2N7 655 aa12.28□□□□□ -0.44
CD44-224ENST00000526669 RRP15Q9Y3B9 282 aaKnown RBP12.28□□□□□ -0.44
CD44-224ENST00000526669 FIGNL2A6NMB9 653 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 SMAD9O15198 467 aaKnown RBP12.27□□□□□ -0.45
CD44-224ENST00000526669 WDR1O75083 606 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 TGM6O95932 706 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 SAGP10523 405 aaPredicted RBP12.27□□□□□ -0.45
CD44-224ENST00000526669 ZNF23P17027 643 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 PRKACGP22612 351 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 ACVR2AP27037 513 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 HMGA2P52926 109 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 NUP107P57740 925 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 RAC3P60763 192 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 SLC35A1P78382 337 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 IL1RL1Q01638 556 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 MICAQ29983 383 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 EIF2S3LQ2VIR3 472 aaKnown RBP12.27□□□□□ -0.45
CD44-224ENST00000526669 OTUD3Q5T2D3 398 aaPredicted RBP12.27□□□□□ -0.45
CD44-224ENST00000526669 PGBD2Q6P3X8 592 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 FCRLAQ7L513 359 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 CCDC103Q8IW40 242 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 GALNT11Q8NCW6 608 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 OR10G2Q8NGC3 310 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 OR5K1Q8NHB7 308 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 ZPLD1Q8TCW7 415 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 GIPC3Q8TF64 312 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 CPNE4Q96A23 557 aaPredicted RBP12.27□□□□□ -0.45
CD44-224ENST00000526669 BPIFA2Q96DR5 249 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 ZHX1-C8orf76Q96EF9 292 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 BDH2Q9BUT1 245 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 TP63Q9H3D4 680 aaPredicted RBP12.27□□□□□ -0.45
CD44-224ENST00000526669 TIGARQ9NQ88 270 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 NANSQ9NR45 359 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 PDP1Q9P0J1 537 aaPredicted RBP12.27□□□□□ -0.45
CD44-224ENST00000526669 CLCF1Q9UBD9 225 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 MCTS1Q9ULC4 181 aaKnown RBP12.27□□□□□ -0.45
CD44-224ENST00000526669 CLEC4AQ9UMR7 237 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 FAM215AQ9Y5M1 114 aa12.27□□□□□ -0.45
CD44-224ENST00000526669 TRAV27A0A087WT01 109 aa12.26□□□□□ -0.45
CD44-224ENST00000526669 SLC22A20A6NK97 555 aa12.26□□□□□ -0.45
CD44-224ENST00000526669 EFCAB9A8MZ26 197 aa12.26□□□□□ -0.45
CD44-224ENST00000526669 AHRRA9YTQ3 701 aa12.26□□□□□ -0.45
CD44-224ENST00000526669 CDC42EP2O14613 210 aa12.26□□□□□ -0.45
CD44-224ENST00000526669 OR2T1O43869 369 aa12.26□□□□□ -0.45
CD44-224ENST00000526669 AQP8O94778 261 aa12.26□□□□□ -0.45
CD44-224ENST00000526669 POU2F1P14859 743 aa12.26□□□□□ -0.45
CD44-224ENST00000526669 GABRA1P14867 456 aa12.26□□□□□ -0.45
CD44-224ENST00000526669 OMPP47874 163 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms