RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 A0A1B0GUH1 482 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 SMAD9O15198 467 aaKnown RBP26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 LRRTM2O43300 516 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 AQP8O94778 261 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 CST1P01037 141 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 GLI4P10075 376 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 ENPP1P22413 925 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 GTF2E2P29084 291 aaKnown RBP26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 C4orf17Q53FE4 359 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 C9orf106Q8NAJ2 232 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 WNT2BQ93097 391 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 DUS3LQ96G46 650 aaKnown RBP26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 MOGAT1Q96PD6 335 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 C20orf141Q9NUB4 165 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 LYVE1Q9Y5Y7 322 aa26.49■■□□□ 1.83
LIMCH1-211ENST00000509638 MBD3L4A6NDZ8 208 aaPredicted RBP26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 MBD3L3A6NE82 208 aaPredicted RBP26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 MBD3L5A6NJ08 208 aaPredicted RBP26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 LRRN3E7EW58 273 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 TIPRLO75663 272 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 BGLAPP02818 100 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 CBLP22681 906 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 SEC23BQ15437 767 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 TBPL2Q6SJ96 375 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 NRMQ8IXM6 262 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 MBD3L2Q8NHZ7 208 aaPredicted RBP26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 RNF128Q8TEB7 428 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 PYDC1Q8WXC3 89 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 FUZQ9BT04 418 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 VNN3Q9NY84 501 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 TENM4Q6N022 2769 aa26.48■■□□□ 1.83
LIMCH1-211ENST00000509638 J3QKU1 62 aa26.47■■□□□ 1.83
LIMCH1-211ENST00000509638 KRT36O76013 467 aa26.47■■□□□ 1.83
LIMCH1-211ENST00000509638 NUP107P57740 925 aa26.47■■□□□ 1.83
LIMCH1-211ENST00000509638 ZNF74Q16587 644 aa26.47■■□□□ 1.83
LIMCH1-211ENST00000509638 MBOAT2Q6ZWT7 520 aa26.47■■□□□ 1.83
LIMCH1-211ENST00000509638 FCRLAQ7L513 359 aa26.47■■□□□ 1.83
LIMCH1-211ENST00000509638 OR6S1Q8NH40 331 aa26.47■■□□□ 1.83
LIMCH1-211ENST00000509638 REEP1Q9H902 201 aa26.47■■□□□ 1.83
LIMCH1-211ENST00000509638 ARMC1Q9NVT9 282 aa26.47■■□□□ 1.83
LIMCH1-211ENST00000509638 C6orf203Q9P0P8 240 aaPredicted RBP26.47■■□□□ 1.83
LIMCH1-211ENST00000509638 AP4S1Q9Y587 144 aa26.47■■□□□ 1.83
LIMCH1-211ENST00000509638 ZNF814B7Z6K7 855 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 EIF1BO60739 113 aaKnown RBP26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 AKR7A3O95154 331 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 CH25HO95992 272 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 AGFG1P52594 562 aaKnown RBP26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 PMPCAQ10713 525 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 EXOC3L2Q2M3D2 409 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 PAQR6Q6TCH4 344 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 ABHD3Q8WU67 409 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 TM9SF2Q99805 663 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 SEC14L4Q9UDX3 406 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 SAMHD1Q9Y3Z3 626 aaKnown RBP26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 U3KQV3 271 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 USP9XQ93008 2570 aaPredicted RBP26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 INTS1Q8N201 2190 aaKnown RBP26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 TNFRSF11BO00300 401 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 FZD7O75084 574 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 ENTPD5O75356 428 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 GRPRP30550 384 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 LIMS1P48059 325 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 H3F3AP84243 136 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 LTBQ06643 244 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 PPP1R8Q12972 351 aaKnown RBP26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 ABLIM2Q6H8Q1 611 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 RRM2BQ7LG56 351 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 SLC46A3Q7Z3Q1 461 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 ALPK1Q96QP1 1244 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 RNF122Q9H9V4 155 aa26.46■■□□□ 1.83
LIMCH1-211ENST00000509638 NCOA6Q14686 2063 aaPredicted RBP26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 SH3PXD2BA1X283 911 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 M0R082 166 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 TOXO94900 526 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 MT-ATP6P00846 226 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 IGF2P01344 180 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 IFI30P13284 250 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 MFSD13AQ14CX5 517 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 OTUD3Q5T2D3 398 aaPredicted RBP26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 TMEM211Q6ICI0 200 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 MEX3DQ86XN8 651 aaKnown RBP26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 RNF113BQ8IZP6 322 aaKnown RBP26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 GCNT2Q8N0V5 402 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 OR4K5Q8NGD3 323 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 ZNF417Q8TAU3 575 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 BPIFA2Q96DR5 249 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 SGTBQ96EQ0 304 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 CCDC120Q96HB5 630 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 ZNF587Q96SQ5 575 aaPredicted RBP26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 FKRPQ9H9S5 495 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 TMCC3Q9ULS5 477 aa26.45■■□□□ 1.82
LIMCH1-211ENST00000509638 AQP7P3A6NL99 342 aa26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 GNGT2O14610 69 aa26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 RAMP1O60894 148 aa26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 TIMP3P35625 211 aa26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 PER3P56645 1201 aa26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 CCDC103Q8IW40 242 aa26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 TMEM99Q8N816 258 aa26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 OR4C15Q8NGM1 316 aa26.44■■□□□ 1.82
LIMCH1-211ENST00000509638 NAA11Q9BSU3 229 aaPredicted RBP26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms