RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 SPTBN4Q9H254 2564 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 PEPDP12955 493 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 ICAM2P13598 275 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 CD79BP40259 229 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 CRYBB2P43320 205 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 ANKDD1AQ495B1 522 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 LRRC17Q8N6Y2 441 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 TM9SF4Q92544 642 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 PTP4A1Q93096 173 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 KISS1RQ969F8 398 aaPredicted RBP20.57■□□□□ 0.88
CDX1-201ENST00000231656 OTULINQ96BN8 352 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 TMEM43Q9BTV4 400 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 CCDC59Q9P031 241 aaKnown RBP20.57■□□□□ 0.88
CDX1-201ENST00000231656 KLK13Q9UKR3 277 aa20.57■□□□□ 0.88
CDX1-201ENST00000231656 CCDC182A6NF36 153 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 ELOA3DA6NLF2 546 aaPredicted RBP20.56■□□□□ 0.88
CDX1-201ENST00000231656 RIIAD1A6NNX1 92 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 ALG1L2C9J202 215 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 LRRN3E7EW58 273 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 OR2J2O76002 312 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 OR7A10O76100 309 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 NDUFB2O95178 105 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 IGF2P01344 180 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 LIFP15018 202 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 ZNF117Q03924 483 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 Q0VFX4 171 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 FOXC1Q12948 553 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 ITGADQ13349 1161 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 ATP1A4Q13733 1029 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 ELOA3BQ3SY89 546 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 LIPKQ5VXJ0 399 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 FCRLBQ6BAA4 426 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 ARHGAP11AQ6P4F7 1023 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 GDPGP1Q6ZNW5 385 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 SIRT6Q8N6T7 355 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 SLC37A3Q8NCC5 494 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 PSD4Q8NDX1 1056 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 ELOA3Q8NG57 546 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 NXF2Q9GZY0 626 aaKnown RBP20.56■□□□□ 0.88
CDX1-201ENST00000231656 STUB1Q9UNE7 303 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 DOCK10Q96BY6 2186 aa20.56■□□□□ 0.88
CDX1-201ENST00000231656 HTR3EA5X5Y0 456 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 OR6C70A6NIJ9 312 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 CLDN25C9JDP6 229 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 PRR23D1E9PI22 279 aaPredicted RBP20.55■□□□□ 0.88
CDX1-201ENST00000231656 PRR23D2P0DMB1 279 aaPredicted RBP20.55■□□□□ 0.88
CDX1-201ENST00000231656 HK1P19367 917 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 IDUAP35475 653 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 SLC6A8P48029 635 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 LHFPL3Q86UP9 236 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 MCFD2Q8NI22 146 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 GATAD2BQ8WXI9 593 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 NXPE2Q96DL1 559 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 ARHGAP9Q9BRR9 750 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 ERVK13-1Q9NX77 482 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 TNFRSF10DQ9UBN6 386 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 CHRNA9Q9UGM1 479 aa20.55■□□□□ 0.88
CDX1-201ENST00000231656 ZC3H12DA2A288 527 aaKnown RBP20.54■□□□□ 0.88
CDX1-201ENST00000231656 J3QRK9 145 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 SLC2A5P22732 501 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 TMED1Q13445 227 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 TPBGQ13641 420 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 CRMP1Q14194 572 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 ZNF846Q147U1 533 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 ZNF404Q494X3 552 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 ARMC4Q5T2S8 1044 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 MARCH3Q86UD3 253 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 OR5M3Q8NGP4 307 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 OR9Q1Q8NGQ5 310 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 TRMT61AQ96FX7 289 aaKnown RBP20.54■□□□□ 0.88
CDX1-201ENST00000231656 PALMDQ9NP74 551 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 WDR70Q9NW82 654 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 ZNF337Q9Y3M9 751 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 SPIN1Q9Y657 262 aaPredicted RBP20.54■□□□□ 0.88
CDX1-201ENST00000231656 A3GALT2U3KPV4 340 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 EIF4E2O60573 245 aaKnown RBP20.54■□□□□ 0.88
CDX1-201ENST00000231656 ZNF3P17036 446 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 PSMA1P25786 263 aaKnown RBP20.54■□□□□ 0.88
CDX1-201ENST00000231656 NOS3P29474 1203 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 RPS4XP62701 263 aaKnown RBP20.54■□□□□ 0.88
CDX1-201ENST00000231656 B3GLCTQ6Y288 498 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 VASH2Q86V25 355 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 MFSD4AQ8N468 514 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 OR51G2Q8NGK0 314 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 SLC22A8Q8TCC7 542 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 S100ZQ8WXG8 99 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 RASL10BQ96S79 203 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 CDADC1Q9BWV3 514 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 ADAM19Q9H013 955 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 MMP27Q9H306 513 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 C12orf10Q9HB07 376 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 HMG20AQ9NP66 347 aa20.54■□□□□ 0.88
CDX1-201ENST00000231656 MCIDASD6RGH6 385 aa20.53■□□□□ 0.88
CDX1-201ENST00000231656 FADS1O60427 444 aa20.53■□□□□ 0.88
CDX1-201ENST00000231656 ITGA10O75578 1167 aa20.53■□□□□ 0.88
CDX1-201ENST00000231656 NAGAP17050 411 aa20.53■□□□□ 0.88
CDX1-201ENST00000231656 FBXW4P57775 412 aa20.53■□□□□ 0.88
CDX1-201ENST00000231656 LYPD8Q6UX82 237 aa20.53■□□□□ 0.88
CDX1-201ENST00000231656 OR52N1Q8NH53 320 aa20.53■□□□□ 0.88
CDX1-201ENST00000231656 LIPHQ8WWY8 451 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms