RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-228	ENST00000617771	DPP8	Q6V1X1	898 aa	Predicted RBP	32.38	■■■□□ 2.77
VEGFA-228	ENST00000617771	CWC25	Q9NXE8	425 aa	Predicted RBP	32.38	■■■□□ 2.77
VEGFA-228	ENST00000617771	MAP3K2	Q9Y2U5	619 aa		32.38	■■■□□ 2.77
VEGFA-228	ENST00000617771	KSR2	Q6VAB6	950 aa		32.37	■■■□□ 2.77
VEGFA-228	ENST00000617771	GPC2	Q8N158	579 aa		32.37	■■■□□ 2.77
VEGFA-228	ENST00000617771	PPIP5K2	O43314	1243 aa		32.36	■■■□□ 2.77
VEGFA-228	ENST00000617771	NIM1K	Q8IY84	436 aa		32.36	■■■□□ 2.77
VEGFA-228	ENST00000617771	MPND	Q8N594	471 aa		32.36	■■■□□ 2.77
VEGFA-228	ENST00000617771	RTFDC1	Q9BY42	306 aa	Predicted RBP	32.36	■■■□□ 2.77
VEGFA-228	ENST00000617771	SCN4A	P35499	1836 aa		32.35	■■■□□ 2.77
VEGFA-228	ENST00000617771	PCCA	P05165	728 aa	Predicted RBP	32.35	■■■□□ 2.77
VEGFA-228	ENST00000617771	COL4A5	P29400	1685 aa		32.34	■■■□□ 2.77
VEGFA-228	ENST00000617771	PI4KAP2	A4QPH2	592 aa		32.34	■■■□□ 2.77
VEGFA-228	ENST00000617771	SLC4A2	P04920	1241 aa		32.34	■■■□□ 2.77
VEGFA-228	ENST00000617771	PI4KAP1	Q8N8J0	262 aa		32.34	■■■□□ 2.77
VEGFA-228	ENST00000617771	TAF1D	Q9H5J8	278 aa	Predicted RBP	32.34	■■■□□ 2.77
VEGFA-228	ENST00000617771	HACL1	Q9UJ83	578 aa		32.34	■■■□□ 2.77
VEGFA-228	ENST00000617771	NEXN	Q0ZGT2	675 aa		32.33	■■■□□ 2.77
VEGFA-228	ENST00000617771	AOC3	Q16853	763 aa		32.33	■■■□□ 2.77
VEGFA-228	ENST00000617771	CHADL	Q6NUI6	762 aa		32.33	■■■□□ 2.77
VEGFA-228	ENST00000617771	CELF1	Q92879	486 aa	Known RBP	32.31	■■■□□ 2.76
VEGFA-228	ENST00000617771	MYH16	Q9H6N6	1097 aa		32.31	■■■□□ 2.76
VEGFA-228	ENST00000617771	GJA3	Q9Y6H8	435 aa		32.31	■■■□□ 2.76
VEGFA-228	ENST00000617771	LDHD	Q86WU2	507 aa		32.3	■■■□□ 2.76
VEGFA-228	ENST00000617771	PDE8A	O60658	829 aa		32.29	■■■□□ 2.76
VEGFA-228	ENST00000617771	VAMP4	O75379	141 aa		32.29	■■■□□ 2.76
VEGFA-228	ENST00000617771	POTEI	P0CG38	1075 aa		32.29	■■■□□ 2.76
VEGFA-228	ENST00000617771	POTEJ	P0CG39	1038 aa		32.29	■■■□□ 2.76
VEGFA-228	ENST00000617771	EXOSC9	Q06265	439 aa	Known RBP	32.29	■■■□□ 2.76
VEGFA-228	ENST00000617771	G2E3	Q7L622	706 aa		32.29	■■■□□ 2.76
VEGFA-228	ENST00000617771	DNAJC5G	Q8N7S2	189 aa		32.29	■■■□□ 2.76
VEGFA-228	ENST00000617771	IGKV5-2	P06315	115 aa		32.28	■■■□□ 2.76
VEGFA-228	ENST00000617771	EPHX2	P34913	555 aa		32.28	■■■□□ 2.76
VEGFA-228	ENST00000617771	HTRA3	P83110	453 aa		32.28	■■■□□ 2.76
VEGFA-228	ENST00000617771	CCDC152	Q4G0S7	254 aa		32.28	■■■□□ 2.76
VEGFA-228	ENST00000617771	TAF1	P21675	1872 aa		32.28	■■■□□ 2.76
VEGFA-228	ENST00000617771	LRRC37A	A6NMS7	1700 aa		32.27	■■■□□ 2.76
VEGFA-228	ENST00000617771	KIAA2012	Q0VF49	1180 aa		32.27	■■■□□ 2.76
VEGFA-228	ENST00000617771	FLII	Q13045	1269 aa		32.27	■■■□□ 2.76
VEGFA-228	ENST00000617771	EAPP	Q56P03	285 aa	Predicted RBP	32.27	■■■□□ 2.76
VEGFA-228	ENST00000617771	PNMA8A	Q86V59	439 aa	Predicted RBP	32.27	■■■□□ 2.76
VEGFA-228	ENST00000617771	CDHR2	Q9BYE9	1310 aa		32.26	■■■□□ 2.76
VEGFA-228	ENST00000617771	LMOD1	P29536	600 aa	Predicted RBP	32.26	■■■□□ 2.75
VEGFA-228	ENST00000617771	RPS8	P62241	208 aa	Known RBP	32.26	■■■□□ 2.75
VEGFA-228	ENST00000617771	JARID2	Q92833	1246 aa	Predicted RBP	32.26	■■■□□ 2.75
VEGFA-228	ENST00000617771	SPINK5	Q9NQ38	1064 aa	Predicted RBP	32.26	■■■□□ 2.75
VEGFA-228	ENST00000617771	ZNRF3	Q9ULT6	936 aa		32.26	■■■□□ 2.75
VEGFA-228	ENST00000617771	FKBP5	Q13451	457 aa	Predicted RBP	32.24	■■■□□ 2.75
VEGFA-228	ENST00000617771	NSFL1C	Q9UNZ2	370 aa	Known RBP	32.24	■■■□□ 2.75
VEGFA-228	ENST00000617771	NEURL1B	A8MQ27	555 aa		32.23	■■■□□ 2.75
VEGFA-228	ENST00000617771	CWF19L2	Q2TBE0	894 aa	Known RBP	32.22	■■■□□ 2.75
VEGFA-228	ENST00000617771	KLRG1	Q96E93	195 aa		32.22	■■■□□ 2.75
VEGFA-228	ENST00000617771	SEC31B	Q9NQW1	1179 aa		32.22	■■■□□ 2.75
VEGFA-228	ENST00000617771	CLEC11A	Q9Y240	323 aa		32.22	■■■□□ 2.75
VEGFA-228	ENST00000617771	DUOX1	Q9NRD9	1551 aa		32.22	■■■□□ 2.75
VEGFA-228	ENST00000617771	SCNN1D	P51172	638 aa		32.2	■■■□□ 2.75
VEGFA-228	ENST00000617771	GPSM2	P81274	684 aa		32.2	■■■□□ 2.75
VEGFA-228	ENST00000617771	DNAAF4	Q8WXU2	420 aa		32.2	■■■□□ 2.75
VEGFA-228	ENST00000617771	COL4A1	P02462	1669 aa		32.19	■■■□□ 2.74
VEGFA-228	ENST00000617771	C6orf229	H3BNL8	230 aa		32.19	■■■□□ 2.74
VEGFA-228	ENST00000617771	CTSW	P56202	376 aa		32.19	■■■□□ 2.74
VEGFA-228	ENST00000617771	CXCL9	Q07325	125 aa		32.19	■■■□□ 2.74
VEGFA-228	ENST00000617771	WASHC4	Q2M389	1173 aa		32.19	■■■□□ 2.74
VEGFA-228	ENST00000617771	CCDC85A	Q96PX6	553 aa	Predicted RBP	32.19	■■■□□ 2.74
VEGFA-228	ENST00000617771	CACNA1F	O60840	1977 aa		32.18	■■■□□ 2.74
VEGFA-228	ENST00000617771	CIAPIN1	Q6FI81	312 aa		32.18	■■■□□ 2.74
VEGFA-228	ENST00000617771	EYA3	Q99504	573 aa		32.18	■■■□□ 2.74
VEGFA-228	ENST00000617771	ZNF521	Q96K83	1311 aa		32.18	■■■□□ 2.74
VEGFA-228	ENST00000617771	TNIP1	Q15025	636 aa		32.17	■■■□□ 2.74
VEGFA-228	ENST00000617771	GCKR	Q14397	625 aa		32.16	■■■□□ 2.74
VEGFA-228	ENST00000617771	ANKRD18A	Q8IVF6	992 aa		32.16	■■■□□ 2.74
VEGFA-228	ENST00000617771	LINS1	Q8NG48	757 aa		32.16	■■■□□ 2.74
VEGFA-228	ENST00000617771	POLL	Q9UGP5	575 aa		32.16	■■■□□ 2.74
VEGFA-228	ENST00000617771	ADAMTSL1	Q8N6G6	1762 aa		32.16	■■■□□ 2.74
VEGFA-228	ENST00000617771		H7C1W4	665 aa		32.15	■■■□□ 2.74
VEGFA-228	ENST00000617771	EPS15	P42566	896 aa		32.15	■■■□□ 2.74
VEGFA-228	ENST00000617771	UBE3B	Q7Z3V4	1068 aa		32.15	■■■□□ 2.74
VEGFA-228	ENST00000617771	CDC5L	Q99459	802 aa	Known RBP	32.15	■■■□□ 2.74
VEGFA-228	ENST00000617771	PODXL2	Q9NZ53	605 aa		32.15	■■■□□ 2.74
VEGFA-228	ENST00000617771	LTBP1	Q14766	1721 aa		32.14	■■■□□ 2.74
VEGFA-228	ENST00000617771	TTLL11	Q8NHH1	800 aa		32.14	■■■□□ 2.74
VEGFA-228	ENST00000617771	TBC1D16	Q8TBP0	767 aa		32.14	■■■□□ 2.74
VEGFA-228	ENST00000617771	CREBZF	Q9NS37	354 aa		32.14	■■■□□ 2.74
VEGFA-228	ENST00000617771	ANKIB1	Q9P2G1	1089 aa		32.14	■■■□□ 2.74
VEGFA-228	ENST00000617771	RAD17	O75943	681 aa		32.13	■■■□□ 2.73
VEGFA-228	ENST00000617771	USP50	Q70EL3	339 aa	Predicted RBP	32.13	■■■□□ 2.73
VEGFA-228	ENST00000617771	PASK	Q96RG2	1323 aa		32.13	■■■□□ 2.73
VEGFA-228	ENST00000617771	GPRC5D	Q9NZD1	345 aa		32.13	■■■□□ 2.73
VEGFA-228	ENST00000617771	RIMBP2	O15034	1052 aa		32.12	■■■□□ 2.73
VEGFA-228	ENST00000617771	RTL9	Q8NET4	1388 aa		32.11	■■■□□ 2.73
VEGFA-228	ENST00000617771	YDJC	A8MPS7	323 aa		32.11	■■■□□ 2.73
VEGFA-228	ENST00000617771	ITGBL1	O95965	494 aa	Predicted RBP	32.11	■■■□□ 2.73
VEGFA-228	ENST00000617771	GMPS	P49915	693 aa	Predicted RBP	32.11	■■■□□ 2.73
VEGFA-228	ENST00000617771	BCL2L13	Q9BXK5	485 aa		32.11	■■■□□ 2.73
VEGFA-228	ENST00000617771	ADARB2	Q9NS39	739 aa	Known RBP	32.11	■■■□□ 2.73
VEGFA-228	ENST00000617771	GGA1	Q9UJY5	639 aa		32.11	■■■□□ 2.73
VEGFA-228	ENST00000617771	UFL1	O94874	794 aa		32.1	■■■□□ 2.73
VEGFA-228	ENST00000617771	MAP1S	Q66K74	1059 aa	Predicted RBP	32.1	■■■□□ 2.73
VEGFA-228	ENST00000617771	CNTROB	Q8N137	903 aa		32.1	■■■□□ 2.73
VEGFA-228	ENST00000617771	JMY	Q8N9B5	988 aa		32.1	■■■□□ 2.73

Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms