RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 RIC3Q7Z5B4 369 aa9.88□□□□□ -0.83
CUX1-219ENST00000606749 C8orf58Q8NAV2 365 aa9.88□□□□□ -0.83
CUX1-219ENST00000606749 GRAPLQ8TC17 118 aaPredicted RBP9.88□□□□□ -0.83
CUX1-219ENST00000606749 PHAXQ9H814 394 aaKnown RBP9.88□□□□□ -0.83
CUX1-219ENST00000606749 TMEM88BA6NKF7 163 aa9.87□□□□□ -0.83
CUX1-219ENST00000606749 LMOD1P29536 600 aaPredicted RBP9.87□□□□□ -0.83
CUX1-219ENST00000606749 CXCL9Q07325 125 aa9.87□□□□□ -0.83
CUX1-219ENST00000606749 RTL5Q5HYW3 569 aaPredicted RBP9.87□□□□□ -0.83
CUX1-219ENST00000606749 TMC4Q7Z404 712 aa9.87□□□□□ -0.83
CUX1-219ENST00000606749 MKRN1Q9UHC7 482 aaKnown RBP9.87□□□□□ -0.83
CUX1-219ENST00000606749 ZNRF3Q9ULT6 936 aa9.87□□□□□ -0.83
CUX1-219ENST00000606749 IRS4O14654 1257 aaPredicted RBP9.86□□□□□ -0.83
CUX1-219ENST00000606749 HSPA1AP0DMV8 641 aaKnown RBP9.86□□□□□ -0.83
CUX1-219ENST00000606749 HSPA1BP0DMV9 641 aaKnown RBP9.86□□□□□ -0.83
CUX1-219ENST00000606749 KIAA2012Q0VF49 1180 aa9.86□□□□□ -0.83
CUX1-219ENST00000606749 TSPYL6Q8N831 410 aa9.86□□□□□ -0.83
CUX1-219ENST00000606749 ANKRD36CQ5JPF3 1778 aa9.86□□□□□ -0.83
CUX1-219ENST00000606749 GOLGA2Q08379 1002 aa9.85□□□□□ -0.83
CUX1-219ENST00000606749 CCDC30Q5VVM6 783 aa9.85□□□□□ -0.83
CUX1-219ENST00000606749 USP50Q70EL3 339 aaPredicted RBP9.85□□□□□ -0.83
CUX1-219ENST00000606749 ZBTB38Q8NAP3 1195 aaPredicted RBP9.85□□□□□ -0.83
CUX1-219ENST00000606749 CELF1Q92879 486 aaKnown RBP9.85□□□□□ -0.83
CUX1-219ENST00000606749 CHMP4AQ9BY43 222 aa9.85□□□□□ -0.83
CUX1-219ENST00000606749 GPRC5DQ9NZD1 345 aa9.85□□□□□ -0.83
CUX1-219ENST00000606749 LAMB2P55268 1798 aa9.85□□□□□ -0.83
CUX1-219ENST00000606749 CNTNAP1P78357 1384 aa9.85□□□□□ -0.83
CUX1-219ENST00000606749 ADAMTSL1Q8N6G6 1762 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 YDJCA8MPS7 323 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 RAD17O75943 681 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 VEGFBP49765 207 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 RPS8P62241 208 aaKnown RBP9.84□□□□□ -0.83
CUX1-219ENST00000606749 TNIP1Q15025 636 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 CCDC27Q2M243 656 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 CIAPIN1Q6FI81 312 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 CCDC191Q8NCU4 936 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 MYD88Q99836 296 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 METTL22Q9BUU2 404 aaPredicted RBP9.84□□□□□ -0.83
CUX1-219ENST00000606749 ADARB2Q9NS39 739 aaKnown RBP9.84□□□□□ -0.83
CUX1-219ENST00000606749 POLLQ9UGP5 575 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 NSFL1CQ9UNZ2 370 aaKnown RBP9.84□□□□□ -0.83
CUX1-219ENST00000606749 TAF1P21675 1872 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 LTBP1Q14766 1721 aa9.84□□□□□ -0.83
CUX1-219ENST00000606749 PCCAP05165 728 aaPredicted RBP9.83□□□□□ -0.84
CUX1-219ENST00000606749 HSP90B1P14625 803 aaKnown RBP9.83□□□□□ -0.84
CUX1-219ENST00000606749 ZEB1P37275 1124 aaPredicted RBP9.83□□□□□ -0.84
CUX1-219ENST00000606749 GMPSP49915 693 aaPredicted RBP9.83□□□□□ -0.84
CUX1-219ENST00000606749 GPSM2P81274 684 aa9.83□□□□□ -0.84
CUX1-219ENST00000606749 FMR1Q06787 632 aaKnown RBP eCLIP9.83□□□□□ -0.84
CUX1-219ENST00000606749 WASHC4Q2M389 1173 aa9.83□□□□□ -0.84
CUX1-219ENST00000606749 DEFB115Q30KQ5 88 aa9.83□□□□□ -0.84
CUX1-219ENST00000606749 WWC1Q8IX03 1113 aa9.83□□□□□ -0.84
CUX1-219ENST00000606749 JARID2Q92833 1246 aaPredicted RBP9.83□□□□□ -0.84
CUX1-219ENST00000606749 TSR2Q969E8 191 aaKnown RBP9.83□□□□□ -0.84
CUX1-219ENST00000606749 RASSF10A6NK89 507 aa9.82□□□□□ -0.84
CUX1-219ENST00000606749 C6orf229H3BNL8 230 aa9.82□□□□□ -0.84
CUX1-219ENST00000606749 RIMBP2O15034 1052 aa9.82□□□□□ -0.84
CUX1-219ENST00000606749 PDE8AO60658 829 aa9.82□□□□□ -0.84
CUX1-219ENST00000606749 DDX58O95786 925 aaKnown RBP9.82□□□□□ -0.84
CUX1-219ENST00000606749 CST9Q5W186 159 aa9.82□□□□□ -0.84
CUX1-219ENST00000606749 KSR2Q6VAB6 950 aa9.82□□□□□ -0.84
CUX1-219ENST00000606749 BCL2L13Q9BXK5 485 aa9.82□□□□□ -0.84
CUX1-219ENST00000606749 SEC31BQ9NQW1 1179 aa9.82□□□□□ -0.84
CUX1-219ENST00000606749 CWC25Q9NXE8 425 aaPredicted RBP9.82□□□□□ -0.84
CUX1-219ENST00000606749 PGAP2Q9UHJ9 254 aa9.82□□□□□ -0.84
CUX1-219ENST00000606749 MAP3K2Q9Y2U5 619 aa9.82□□□□□ -0.84
CUX1-219ENST00000606749 DDX60Q8IY21 1712 aaKnown RBP9.82□□□□□ -0.84
CUX1-219ENST00000606749 PI4KAP2A4QPH2 592 aa9.81□□□□□ -0.84
CUX1-219ENST00000606749 TRAF5O00463 557 aa9.81□□□□□ -0.84
CUX1-219ENST00000606749 HIRAP54198 1017 aaPredicted RBP9.81□□□□□ -0.84
CUX1-219ENST00000606749 CCDC152Q4G0S7 254 aa9.81□□□□□ -0.84
CUX1-219ENST00000606749 NCBP3Q53F19 620 aaKnown RBP9.81□□□□□ -0.84
CUX1-219ENST00000606749 PI4KAP1Q8N8J0 262 aa9.81□□□□□ -0.84
CUX1-219ENST00000606749 TBC1D16Q8TBP0 767 aa9.81□□□□□ -0.84
CUX1-219ENST00000606749 DBNDD1Q9H9R9 158 aa9.81□□□□□ -0.84
CUX1-219ENST00000606749 KCNQ5Q9NR82 932 aa9.81□□□□□ -0.84
CUX1-219ENST00000606749 CNOT7Q9UIV1 285 aaKnown RBP9.81□□□□□ -0.84
CUX1-219ENST00000606749 ABT1Q9ULW3 272 aaKnown RBP9.81□□□□□ -0.84
CUX1-219ENST00000606749 WDR33Q9C0J8 1336 aaKnown RBP9.81□□□□□ -0.84
CUX1-219ENST00000606749 SHTN1A0MZ66 631 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 ZNF316A6NFI3 1004 aaPredicted RBP9.8□□□□□ -0.84
CUX1-219ENST00000606749 H7C1D1 291 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 PSMD14O00487 310 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 FOXN1O15353 648 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 SLC4A2P04920 1241 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 IGKV5-2P06315 115 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 DOK7Q18PE1 504 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 TWISTNBQ3B726 338 aaPredicted RBP9.8□□□□□ -0.84
CUX1-219ENST00000606749 G2E3Q7L622 706 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 TNS4Q8IZW8 715 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 ZC3H15Q8WU90 426 aaKnown RBP9.8□□□□□ -0.84
CUX1-219ENST00000606749 DPF2Q92785 391 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 EYA3Q99504 573 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 STK31Q9BXU1 1019 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 MRS2Q9HD23 443 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 PODXL2Q9NZ53 605 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 ZBTB12Q9Y330 459 aaPredicted RBP9.8□□□□□ -0.84
CUX1-219ENST00000606749 COL4A1P02462 1669 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 IL16Q14005 1332 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 CDHR2Q9BYE9 1310 aa9.8□□□□□ -0.84
CUX1-219ENST00000606749 DUOX1Q9NRD9 1551 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms