RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 G2E3Q7L622 706 aa16.82■□□□□ 0.28
LIG1-212ENST00000596549 FAM9BQ8IZU0 186 aa16.82■□□□□ 0.28
LIG1-212ENST00000596549 ZBTB38Q8NAP3 1195 aaPredicted RBP16.82■□□□□ 0.28
LIG1-212ENST00000596549 CELF1Q92879 486 aaKnown RBP16.82■□□□□ 0.28
LIG1-212ENST00000596549 METTL22Q9BUU2 404 aaPredicted RBP16.82■□□□□ 0.28
LIG1-212ENST00000596549 RTFDC1Q9BY42 306 aaPredicted RBP16.82■□□□□ 0.28
LIG1-212ENST00000596549 MAP3K2Q9Y2U5 619 aa16.82■□□□□ 0.28
LIG1-212ENST00000596549 IRS4O14654 1257 aaPredicted RBP16.81■□□□□ 0.28
LIG1-212ENST00000596549 WDR63Q8IWG1 891 aa16.81■□□□□ 0.28
LIG1-212ENST00000596549 SP8Q8IXZ3 490 aa16.81■□□□□ 0.28
LIG1-212ENST00000596549 LARGE2Q8N3Y3 721 aa16.81■□□□□ 0.28
LIG1-212ENST00000596549 DNAJC5GQ8N7S2 189 aa16.81■□□□□ 0.28
LIG1-212ENST00000596549 TAF1DQ9H5J8 278 aaPredicted RBP16.81■□□□□ 0.28
LIG1-212ENST00000596549 SCN9AQ15858 1988 aa16.8■□□□□ 0.28
LIG1-212ENST00000596549 PI4KAP2A4QPH2 592 aa16.8■□□□□ 0.28
LIG1-212ENST00000596549 IQCA1LA6NCM1 817 aa16.8■□□□□ 0.28
LIG1-212ENST00000596549 PPIP5K2O43314 1243 aa16.8■□□□□ 0.28
LIG1-212ENST00000596549 BBOX1O75936 387 aa16.8■□□□□ 0.28
LIG1-212ENST00000596549 PCCAP05165 728 aaPredicted RBP16.8■□□□□ 0.28
LIG1-212ENST00000596549 IGKV5-2P06315 115 aa16.8■□□□□ 0.28
LIG1-212ENST00000596549 GPC2Q8N158 579 aa16.8■□□□□ 0.28
LIG1-212ENST00000596549 PI4KAP1Q8N8J0 262 aa16.8■□□□□ 0.28
LIG1-212ENST00000596549 CCDC191Q8NCU4 936 aa16.8■□□□□ 0.28
LIG1-212ENST00000596549 JDP2Q8WYK2 163 aa16.8■□□□□ 0.28
LIG1-212ENST00000596549 STK31Q9BXU1 1019 aa16.8■□□□□ 0.28
LIG1-212ENST00000596549 ZNF521Q96K83 1311 aa16.79■□□□□ 0.28
LIG1-212ENST00000596549 DDX58O95786 925 aaKnown RBP16.79■□□□□ 0.28
LIG1-212ENST00000596549 KSR2Q6VAB6 950 aa16.79■□□□□ 0.28
LIG1-212ENST00000596549 JARID2Q92833 1246 aaPredicted RBP16.79■□□□□ 0.28
LIG1-212ENST00000596549 CWC25Q9NXE8 425 aaPredicted RBP16.79■□□□□ 0.28
LIG1-212ENST00000596549 CDHR2Q9BYE9 1310 aa16.78■□□□□ 0.28
LIG1-212ENST00000596549 EXOSC9Q06265 439 aaKnown RBP16.78■□□□□ 0.28
LIG1-212ENST00000596549 DPP8Q6V1X1 898 aaPredicted RBP16.78■□□□□ 0.28
LIG1-212ENST00000596549 MPNDQ8N594 471 aa16.78■□□□□ 0.28
LIG1-212ENST00000596549 CHMP4AQ9BY43 222 aa16.78■□□□□ 0.28
LIG1-212ENST00000596549 TRPM7Q96QT4 1865 aa16.78■□□□□ 0.28
LIG1-212ENST00000596549 VAMP4O75379 141 aa16.77■□□□□ 0.28
LIG1-212ENST00000596549 SLC4A2P04920 1241 aa16.77■□□□□ 0.28
LIG1-212ENST00000596549 EPHX2P34913 555 aa16.77■□□□□ 0.28
LIG1-212ENST00000596549 SCNN1DP51172 638 aa16.77■□□□□ 0.28
LIG1-212ENST00000596549 EIF6P56537 245 aaKnown RBP16.77■□□□□ 0.28
LIG1-212ENST00000596549 KIAA2012Q0VF49 1180 aa16.77■□□□□ 0.28
LIG1-212ENST00000596549 FLIIQ13045 1269 aa16.77■□□□□ 0.28
LIG1-212ENST00000596549 CWF19L2Q2TBE0 894 aaKnown RBP16.77■□□□□ 0.28
LIG1-212ENST00000596549 CHADLQ6NUI6 762 aa16.77■□□□□ 0.28
LIG1-212ENST00000596549 TMC4Q7Z404 712 aa16.77■□□□□ 0.28
LIG1-212ENST00000596549 NIM1KQ8IY84 436 aa16.77■□□□□ 0.28
LIG1-212ENST00000596549 SEC31BQ9NQW1 1179 aa16.77■□□□□ 0.28
LIG1-212ENST00000596549 HACL1Q9UJ83 578 aa16.77■□□□□ 0.28
LIG1-212ENST00000596549 LDHDQ86WU2 507 aa16.76■□□□□ 0.27
LIG1-212ENST00000596549 SUPT20HQ8NEM7 779 aa16.76■□□□□ 0.27
LIG1-212ENST00000596549 TMX4Q9H1E5 349 aaPredicted RBP16.76■□□□□ 0.27
LIG1-212ENST00000596549 VPS33BQ9H267 617 aa16.76■□□□□ 0.27
LIG1-212ENST00000596549 GJA3Q9Y6H8 435 aa16.76■□□□□ 0.27
LIG1-212ENST00000596549 NEURL1BA8MQ27 555 aa16.75■□□□□ 0.27
LIG1-212ENST00000596549 PDE8AO60658 829 aa16.75■□□□□ 0.27
LIG1-212ENST00000596549 PASKQ96RG2 1323 aa16.74■□□□□ 0.27
LIG1-212ENST00000596549 GPSM2P81274 684 aa16.74■□□□□ 0.27
LIG1-212ENST00000596549 EAPPQ56P03 285 aaPredicted RBP16.74■□□□□ 0.27
LIG1-212ENST00000596549 KLRG1Q96E93 195 aa16.74■□□□□ 0.27
LIG1-212ENST00000596549 CCDC85AQ96PX6 553 aaPredicted RBP16.74■□□□□ 0.27
LIG1-212ENST00000596549 YDJCA8MPS7 323 aa16.73■□□□□ 0.27
LIG1-212ENST00000596549 CTSWP56202 376 aa16.73■□□□□ 0.27
LIG1-212ENST00000596549 CXCL9Q07325 125 aa16.73■□□□□ 0.27
LIG1-212ENST00000596549 ZNRF3Q9ULT6 936 aa16.73■□□□□ 0.27
LIG1-212ENST00000596549 EPS15P42566 896 aa16.72■□□□□ 0.27
LIG1-212ENST00000596549 RPS8P62241 208 aaKnown RBP16.72■□□□□ 0.27
LIG1-212ENST00000596549 NEXNQ0ZGT2 675 aa16.72■□□□□ 0.27
LIG1-212ENST00000596549 FKBP5Q13451 457 aaPredicted RBP16.72■□□□□ 0.27
LIG1-212ENST00000596549 CCDC152Q4G0S7 254 aa16.72■□□□□ 0.27
LIG1-212ENST00000596549 GPR101Q96P66 508 aaPredicted RBP16.72■□□□□ 0.27
LIG1-212ENST00000596549 POLLQ9UGP5 575 aa16.72■□□□□ 0.27
LIG1-212ENST00000596549 NSFL1CQ9UNZ2 370 aaKnown RBP16.72■□□□□ 0.27
LIG1-212ENST00000596549 RTL9Q8NET4 1388 aa16.72■□□□□ 0.27
LIG1-212ENST00000596549 THSD7BQ9C0I4 1608 aa16.71■□□□□ 0.27
LIG1-212ENST00000596549 CASP7P55210 303 aa16.71■□□□□ 0.27
LIG1-212ENST00000596549 UBE3BQ7Z3V4 1068 aa16.71■□□□□ 0.27
LIG1-212ENST00000596549 DNAAF4Q8WXU2 420 aa16.71■□□□□ 0.27
LIG1-212ENST00000596549 MYH16Q9H6N6 1097 aa16.71■□□□□ 0.27
LIG1-212ENST00000596549 H7C1W4 665 aa16.7■□□□□ 0.26
LIG1-212ENST00000596549 ITGBL1O95965 494 aaPredicted RBP16.7■□□□□ 0.26
LIG1-212ENST00000596549 HSP90B1P14625 803 aaKnown RBP16.7■□□□□ 0.26
LIG1-212ENST00000596549 LMOD1P29536 600 aaPredicted RBP16.7■□□□□ 0.26
LIG1-212ENST00000596549 PNMA8AQ86V59 439 aaPredicted RBP16.7■□□□□ 0.26
LIG1-212ENST00000596549 JMYQ8N9B5 988 aa16.7■□□□□ 0.26
LIG1-212ENST00000596549 TBC1D16Q8TBP0 767 aa16.7■□□□□ 0.26
LIG1-212ENST00000596549 RAD17O75943 681 aa16.69■□□□□ 0.26
LIG1-212ENST00000596549 GCKRQ14397 625 aa16.69■□□□□ 0.26
LIG1-212ENST00000596549 WASHC4Q2M389 1173 aa16.69■□□□□ 0.26
LIG1-212ENST00000596549 MAP1SQ66K74 1059 aaPredicted RBP16.69■□□□□ 0.26
LIG1-212ENST00000596549 CIAPIN1Q6FI81 312 aa16.69■□□□□ 0.26
LIG1-212ENST00000596549 TTLL11Q8NHH1 800 aa16.69■□□□□ 0.26
LIG1-212ENST00000596549 GREM2Q9H772 168 aa16.69■□□□□ 0.26
LIG1-212ENST00000596549 DBNDD1Q9H9R9 158 aa16.69■□□□□ 0.26
LIG1-212ENST00000596549 PODXL2Q9NZ53 605 aa16.69■□□□□ 0.26
LIG1-212ENST00000596549 GPRC5DQ9NZD1 345 aa16.69■□□□□ 0.26
LIG1-212ENST00000596549 F6X3S4 739 aa16.68■□□□□ 0.26
LIG1-212ENST00000596549 RIMBP2O15034 1052 aa16.68■□□□□ 0.26
LIG1-212ENST00000596549 GMPSP49915 693 aaPredicted RBP16.68■□□□□ 0.26
LIG1-212ENST00000596549 LINS1Q8NG48 757 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms