RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	EIF4A1	P60842	406 aa	Known RBP	11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	SYCP1	Q15431	976 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	PTPN14	Q15678	1187 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	KMT5B	Q4FZB7	885 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	IFFO2	Q5TF58	517 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	C14orf37	Q86TY3	774 aa		11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	EAF2	Q96CJ1	260 aa	Predicted RBP	11.28	□□□□□ -0.6
PPP4R1-222	ENST00000582594	LRRC37A3	O60309	1634 aa		11.27	□□□□□ -0.6
PPP4R1-222	ENST00000582594	SKIL	P12757	684 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	RBM43	Q6ZSC3	357 aa	Known RBP	11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	KLHDC4	Q8TBB5	520 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	MAP3K2	Q9Y2U5	619 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CRYBG1	Q9Y4K1	1723 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ADCY9	O60503	1353 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ZBTB22	O15209	634 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	SLFN14	P0C7P3	912 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	IQCB1	Q15051	598 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ELF2	Q15723	593 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	KLHL34	Q8N239	644 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ST7	Q9NRC1	585 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	NDUFB9	Q9Y6M9	179 aa		11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	SETD1B	Q9UPS6	1966 aa	Known RBP	11.27	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CCDC69	A6NI79	296 aa		11.26	□□□□□ -0.61
PPP4R1-222	ENST00000582594	SASH1	O94885	1247 aa		11.26	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CHGB	P05060	677 aa		11.26	□□□□□ -0.61
PPP4R1-222	ENST00000582594	REST	Q13127	1097 aa		11.26	□□□□□ -0.61
PPP4R1-222	ENST00000582594	PROSER3	Q2NL68	480 aa		11.26	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ESF1	Q9H501	851 aa	Known RBP	11.26	□□□□□ -0.61
PPP4R1-222	ENST00000582594	BECN2	A8MW95	431 aa		11.26	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ANKRD1	Q15327	319 aa		11.26	□□□□□ -0.61
PPP4R1-222	ENST00000582594	RNF20	Q5VTR2	975 aa		11.26	□□□□□ -0.61
PPP4R1-222	ENST00000582594	MORC2	Q9Y6X9	1032 aa	Predicted RBP	11.26	□□□□□ -0.61
PPP4R1-222	ENST00000582594	NPHP4	O75161	1426 aa	Predicted RBP	11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ERICH4	A6NGS2	130 aa		11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CCAR1	Q8IX12	1150 aa	Known RBP	11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	TOPAZ1	Q8N9V7	1692 aa		11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	HDGF	P51858	240 aa	Known RBP	11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	GABPB1	Q06547	395 aa	Predicted RBP	11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	G3BP1	Q13283	466 aa	Known RBP eCLIP	11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	FBXO38	Q6PIJ6	1188 aa		11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CCDC129	Q6ZRS4	1044 aa		11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ZNF397	Q8NF99	534 aa	Predicted RBP	11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	GOLPH3L	Q9H4A5	285 aa		11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	PRAMEF22	A3QJZ6	481 aa		11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	AIMP1	Q12904	312 aa	Known RBP	11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594		Q6ZUG5	572 aa		11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	SUCLG2	Q96I99	432 aa		11.25	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CDC25B	P30305	580 aa		11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	GUCY1B3	Q02153	619 aa		11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ERC1	Q8IUD2	1116 aa		11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	KRT222	Q8N1A0	295 aa		11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CCDC9	Q9Y3X0	531 aa	Known RBP	11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	BTBD11	A6QL63	1104 aa		11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CCZ1B	P86790	482 aa		11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CCZ1	P86791	482 aa	Predicted RBP	11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	STX1A	Q16623	288 aa		11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	MPRIP	Q6WCQ1	1025 aa		11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	AOPEP	Q8N6M6	819 aa		11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	GTF3C6	Q969F1	213 aa		11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	BICC1	Q9H694	974 aa	Known RBP	11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CHD2	O14647	1828 aa	Known RBP	11.24	□□□□□ -0.61
PPP4R1-222	ENST00000582594	HIP1	O00291	1037 aa		11.23	□□□□□ -0.61
PPP4R1-222	ENST00000582594	FGD1	P98174	961 aa		11.23	□□□□□ -0.61
PPP4R1-222	ENST00000582594	TERF2	Q15554	542 aa		11.23	□□□□□ -0.61
PPP4R1-222	ENST00000582594	PLPPR3	Q6T4P5	718 aa		11.23	□□□□□ -0.61
PPP4R1-222	ENST00000582594	RGPD8	O14715	1765 aa	Predicted RBP	11.23	□□□□□ -0.61
PPP4R1-222	ENST00000582594	TEF	Q10587	303 aa		11.23	□□□□□ -0.61
PPP4R1-222	ENST00000582594	MTX1	Q13505	466 aa		11.23	□□□□□ -0.61
PPP4R1-222	ENST00000582594	NYAP1	Q6ZVC0	841 aa		11.23	□□□□□ -0.61
PPP4R1-222	ENST00000582594	DHX40	Q8IX18	779 aa	Known RBP	11.23	□□□□□ -0.61
PPP4R1-222	ENST00000582594	SEC62	Q99442	399 aa	Known RBP	11.23	□□□□□ -0.61
PPP4R1-222	ENST00000582594	LTK	P29376	864 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	RBM6	P78332	1123 aa	Known RBP	11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CCAR2	Q8N163	923 aa	Known RBP	11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	LRRN4CL	Q8ND94	238 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	MRFAP1L1	Q96HT8	127 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	NEK1	Q96PY6	1258 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	BABAM1	Q9NWV8	329 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	TAF5L	O75529	589 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	SCRN1	Q12765	414 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	NWD1	Q149M9	1564 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ADAMTS13	Q76LX8	1427 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ABTB2	Q8N961	1025 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	KAZALD1	Q96I82	304 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CFAP45	Q9UL16	551 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ERBB3	P21860	1342 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	PDIA4	P13667	645 aa	Known RBP	11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CCT2	P78371	535 aa	Known RBP	11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	SARM1	Q6SZW1	724 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	CCDC73	Q6ZRK6	1079 aa		11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	BBX	Q8WY36	941 aa	Predicted RBP	11.22	□□□□□ -0.61
PPP4R1-222	ENST00000582594	STRC	Q7RTU9	1775 aa		11.21	□□□□□ -0.61
PPP4R1-222	ENST00000582594	MED23	Q9ULK4	1368 aa		11.21	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ADGRL3	Q9HAR2	1447 aa		11.21	□□□□□ -0.61
PPP4R1-222	ENST00000582594	KIN	O60870	393 aa	Known RBP	11.21	□□□□□ -0.61
PPP4R1-222	ENST00000582594	SLU7	O95391	586 aa	Known RBP	11.21	□□□□□ -0.61
PPP4R1-222	ENST00000582594	GORAB	Q5T7V8	394 aa		11.21	□□□□□ -0.61
PPP4R1-222	ENST00000582594	ERO1A	Q96HE7	468 aa		11.21	□□□□□ -0.61
PPP4R1-222	ENST00000582594	USP28	Q96RU2	1077 aa		11.21	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms